[Bio] / FigKernelScripts / blastP.pl Repository:
ViewVC logotype

View of /FigKernelScripts/blastP.pl

Parent Directory Parent Directory | Revision Log Revision Log


Revision 1.1 - (download) (as text) (annotate)
Fri Aug 21 21:32:41 2009 UTC (10 years, 2 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_08112011, mgrast_dev_08022011, rast_rel_2014_0912, myrast_rel40, mgrast_dev_05262011, mgrast_dev_04082011, rast_rel_2010_0928, mgrast_version_3_2, mgrast_dev_12152011, mgrast_dev_06072011, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, rast_rel_2011_0119, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, mgrast_dev_04012011, rast_rel_2010_0827, myrast_33, rast_rel_2011_0928, mgrast_dev_04052011, mgrast_dev_02222011, mgrast_dev_10262011, HEAD
Switch to using assign_functions_to_prot_set in assign_using_kmers.pl.
Add blastP script for invoking ProtSims::blastP from the command line.

use ProtSims;

@ARGV == 3 or die "Usage: $0 query-file db-file min-hits\n";
my $q = shift;
my $db = shift;
my $min_hits = shift;

my @out = &ProtSims::blastP($q, $db, $min_hits);

print join("\t", @$_), "\n" for @out;

MCS Webmaster
ViewVC Help
Powered by ViewVC 1.0.3