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Revision 1.5 - (download) (as text) (annotate)
Fri May 15 20:28:36 2009 UTC (10 years, 9 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, myrast_rel40, mgrast_dev_05262011, mgrast_dev_04082011, rast_rel_2010_0928, mgrast_version_3_2, mgrast_dev_12152011, mgrast_dev_06072011, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, rast_rel_2011_0119, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, mgrast_dev_04012011, rast_rel_2009_07_09, rast_rel_2010_0827, myrast_33, rast_rel_2011_0928, mgrast_dev_04052011, mgrast_dev_02222011, mgrast_dev_10262011, HEAD
Changes since 1.4: +2 -2 lines
fix bug that kept subsystems from being backedup

#
# Copyright (c) 2003-2006 University of Chicago and Fellowship
# for Interpretations of Genomes. All Rights Reserved.
#
# This file is part of the SEED Toolkit.
# 
# The SEED Toolkit is free software. You can redistribute
# it and/or modify it under the terms of the SEED Toolkit
# Public License. 
#
# You should have received a copy of the SEED Toolkit Public License
# along with this program; if not write to the University of Chicago
# at info@ci.uchicago.edu or the Fellowship for Interpretation of
# Genomes at veronika@thefig.info or download a copy from
# http://www.theseed.org/LICENSE.TXT.
#

#
# Back up critical user data: Subsystems, annotations, and assignments to a tarfile.
#
# We default the location to be the top of the FIGdisk. If a file FIGdisk/config/Backup_Config.pm exists,
# it can define an alternative location. Sample bcakup config:
#
# package Backup_Config;
# $backup_dir = "/tmp";
# 1;
#
# Note: we assume gnu tar here.
#

use strict;

my $usage = "backup_critical_data";

my $backup_dir;
my $verbose;

$verbose++ if ($ARGV[0] eq '-v');

use FIG_Config;
use FIG;

use POSIX;

eval {
    require Backup_Config;

    $backup_dir = $Backup_Config::backup_dir;
};

if (!defined($backup_dir))
{
    $backup_dir = "$FIG_Config::fig_disk/CriticalBackup";
    &FIG::verify_dir($backup_dir);
}

my $now = time;
my $tag= strftime("%m-%d-%y-%H-%M-%S", localtime($now));

my $out_file = "$backup_dir/seedcritdata.$tag.tgz";

#
# See if we have gnutar.
#

my $vers_str = `tar --version`;
if ($? != 0 or $vers_str !~ /GNU/)
{
    die "GNU Tar is required for backup_critical_data";
}

#
# Do the find/tar.
#

my $verbose_opt;

$verbose_opt = "-v" if $verbose;

my $find_cmd = "cd $FIG_Config::data/.; (echo Subsystems; find ./Organisms  \\( -name assigned_functions -o -name annotations -o -name Subsystems \\) -print) ";
my $tar_cmd = "tar $verbose_opt -c -z -f $out_file --files-from=-";

my $cmd = "$find_cmd| $tar_cmd";

if ($verbose)
{
    print "Command: $cmd\n";
}

my $rc = system($cmd);

if ($rc != 0)
{
    if (WIFEXITED($rc))
    {
	die "Backup exited with nonzero exit status " . WEXITSTATUS($rc);
    }
    elsif (WIFSIGNALED($rc))
    {
	die "Backup exited with signal " . WTERMSIG($rc);
    }
    else
    {
	die "Backup exited with rc=$rc";
    }
}

chmod(0444, $out_file);

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