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Revision 1.21 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Feb 11 21:44:29 2015 UTC (4 years, 9 months ago) by gdpusch
Branch: MAIN
CVS Tags: HEAD
Changes since 1.20: +10 -1 lines
Diff to previous 1.20
Accept as few as a single template if it is in a subsystem.

Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 23 16:38:16 2010 UTC (9 years, 4 months ago) by gdpusch
Branch: MAIN
CVS Tags: mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912
Changes since 1.19: +12 -7 lines
Diff to previous 1.19
Added check to make sure comparison genome exists, in case RAST and OTU servers get out of synch.

Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Thu May 21 10:01:47 2009 UTC (10 years, 6 months ago) by gdpusch
Branch: MAIN
CVS Tags: rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526
Changes since 1.18: +39 -15 lines
Diff to previous 1.18
Modified to allow "close_genome_file" entries to be OrgDirs.

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jan 23 22:39:15 2009 UTC (10 years, 9 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2009_02_05, rast_rel_2009_03_26
Changes since 1.17: +1 -1 lines
Diff to previous 1.17
fix memory leak

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 17 20:45:44 2008 UTC (11 years, 5 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, rast_2008_0924, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_release_2008_09_29
Changes since 1.16: +1 -1 lines
Diff to previous 1.16
fix typo

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 17 20:42:02 2008 UTC (11 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.15: +6 -1 lines
Diff to previous 1.15
Make sure to give FIG::translate() the right translation table.

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Feb 13 14:54:27 2008 UTC (11 years, 9 months ago) by gdpusch
Branch: MAIN
CVS Tags: rast_rel_2008_04_23, rast_rel_2008_06_16
Changes since 1.14: +2 -2 lines
Diff to previous 1.14
Final clean-up. -- /gdp

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Feb 9 23:08:00 2008 UTC (11 years, 9 months ago) by gdpusch
Branch: MAIN
Changes since 1.13: +91 -83 lines
Diff to previous 1.13
converted to "uae strict; use warnings;" -- /gdp

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jan 25 21:16:19 2008 UTC (11 years, 9 months ago) by gdpusch
Branch: MAIN
Changes since 1.12: +9 -1 lines
Diff to previous 1.12
Added search-interval constraint on call to &pick_gene_boundaries(). -- /gdp

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jan 20 21:42:33 2008 UTC (11 years, 10 months ago) by gdpusch
Branch: MAIN
Changes since 1.11: +56 -29 lines
Diff to previous 1.11
Major re-write to conform to revisions in "Location.pm," and to add improved diagnostics. -- /gdp

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Dec 9 02:14:57 2007 UTC (11 years, 11 months ago) by gdpusch
Branch: MAIN
Changes since 1.10: +1 -1 lines
Diff to previous 1.10
Minor additional bulletproofing of &get_dna(). -- /gdp

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 3 23:24:20 2007 UTC (11 years, 11 months ago) by gdpusch
Branch: MAIN
Changes since 1.9: +10 -3 lines
Diff to previous 1.9
Fixed @ARGV processing bug. -- /gdp

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 3 20:09:40 2007 UTC (11 years, 11 months ago) by gdpusch
Branch: MAIN
Changes since 1.8: +24 -12 lines
Diff to previous 1.8
Added alternate genetic code support. -- /gdp

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Nov 30 21:53:05 2007 UTC (11 years, 11 months ago) by gdpusch
Branch: MAIN
Changes since 1.7: +32 -16 lines
Diff to previous 1.7
Added FIGV support. -- /gdp

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jun 5 15:37:58 2006 UTC (13 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.6: +1 -1 lines
Diff to previous 1.6
Modified to accept close_genomes_file instead of closest_org argument. -- /gdp

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jun 5 00:40:56 2006 UTC (13 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.5: +28 -34 lines
Diff to previous 1.5
fix setting links to other BRCs

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Wed May 31 12:17:14 2006 UTC (13 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.4: +2 -2 lines
Diff to previous 1.4
Now accepts "orf" as valid feature type. Minor cosmetic changes. -- /gdp

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 5 18:56:37 2005 UTC (13 years, 11 months ago) by olson
Branch: MAIN
CVS Tags: caBIG-05Apr06-00, caBIG-13Feb06-00
Changes since 1.3: +17 -0 lines
Diff to previous 1.3
Add license words.

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 12 21:13:41 2005 UTC (14 years, 1 month ago) by overbeek
Branch: MAIN
CVS Tags: caBIG-00-00-00
Changes since 1.2: +1 -1 lines
Diff to previous 1.2
Corrected usgae msg. -- /gdp

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Oct 8 14:19:05 2005 UTC (14 years, 1 month ago) by overbeek
Branch: MAIN
Changes since 1.1: +1 -1 lines
Diff to previous 1.1
Fixed eror in usage msg. -- /gdp

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Oct 7 05:43:36 2005 UTC (14 years, 1 month ago) by overbeek
Branch: MAIN
Tool to look for PEGs in gaps, using similarity. -- /gdp

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