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Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 5 11:52:32 2010 UTC (9 years, 3 months ago) by olson
Branch: MAIN
CVS Tags: HEAD, mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912
Changes since 1.13: +3 -1 lines
Diff to previous 1.13
don't write the overlap report to metadata log; it is very large.

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jul 28 15:54:51 2010 UTC (9 years, 3 months ago) by gdpusch
Branch: MAIN
Changes since 1.12: +1 -1 lines
Diff to previous 1.12
Made non-prokaryote a "warn" instead of a "die.

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Apr 1 23:00:01 2009 UTC (10 years, 7 months ago) by gdpusch
Branch: MAIN
CVS Tags: rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526
Changes since 1.11: +18 -3 lines
Diff to previous 1.11
Stuck in a plasmid hack, until we figure out how to handle plasmids properly.

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Apr 1 22:17:59 2009 UTC (10 years, 7 months ago) by gdpusch
Branch: MAIN
Changes since 1.10: +13 -5 lines
Diff to previous 1.10
Stuck in a plasmid hack, until we figure out how to handle plasmids properly.

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Apr 11 21:00:38 2007 UTC (12 years, 7 months ago) by overbeek
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, rast_2008_0924, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_release_2008_09_29
Changes since 1.9: +44 -31 lines
Diff to previous 1.9
Added brute-force "-no_fatal" hack to convert FATALs to WARNINGs. -- /gdp

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Feb 1 21:17:50 2007 UTC (12 years, 9 months ago) by olson
Branch: MAIN
Changes since 1.8: +1 -1 lines
Diff to previous 1.8
use full pathnames

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Dec 14 19:59:32 2006 UTC (12 years, 11 months ago) by overbeek
Branch: MAIN
Changes since 1.7: +2 -2 lines
Diff to previous 1.7
Made initial log-entry more informative. -- /gdp

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 4 20:53:45 2006 UTC (12 years, 11 months ago) by overbeek
Branch: MAIN
Changes since 1.6: +6 -6 lines
Diff to previous 1.6
Fixed bugs RE: metafile handling. -- /gdp

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Nov 30 04:43:23 2006 UTC (12 years, 11 months ago) by olson
Branch: MAIN
Changes since 1.5: +1 -1 lines
Diff to previous 1.5
make the test for taxonomy not care if there are leading spaces in the TAXONOMY file.

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Nov 28 21:23:24 2006 UTC (12 years, 11 months ago) by olson
Branch: MAIN
Changes since 1.4: +27 -24 lines
Diff to previous 1.4
always write output even if things are okay

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Nov 28 17:49:08 2006 UTC (12 years, 11 months ago) by olson
Branch: MAIN
Changes since 1.3: +34 -3 lines
Diff to previous 1.3
48-hr quality fixes

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 22 16:10:20 2006 UTC (12 years, 11 months ago) by overbeek
Branch: MAIN
Changes since 1.2: +78 -13 lines
Diff to previous 1.2
Added RP metafile support. -- /gdp

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 15 20:25:47 2006 UTC (13 years ago) by olson
Branch: MAIN
Changes since 1.1: +1 -1 lines
Diff to previous 1.1
fix -h error

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 1 17:21:51 2006 UTC (13 years ago) by overbeek
Branch: MAIN
Moved `assess_genome_quality.pl` to `assess_gene_call_quality.pl`. -- /gdp

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