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Revision 1.38 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jul 30 19:25:49 2010 UTC (9 years, 8 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928
Changes since 1.37: +58 -4 lines
Diff to previous 1.37
add assignment logging, index on org.

Revision 1.37 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Oct 9 18:40:03 2009 UTC (10 years, 5 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2010_0118, rast_rel_2010_0526
Changes since 1.36: +1 -1 lines
Diff to previous 1.36
Fix index_translation and add_assertions_of_function issues.

Revision 1.36 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Jan 10 03:11:16 2009 UTC (11 years, 2 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925
Changes since 1.35: +2 -2 lines
Diff to previous 1.35
update ID sizes for new NR

Revision 1.35 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Feb 18 21:31:38 2008 UTC (12 years, 1 month ago) by olson
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, rast_2008_0924, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_release_2008_09_29
Changes since 1.34: +5 -0 lines
Diff to previous 1.34
*** empty log message ***

Revision 1.34 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jan 12 21:24:28 2007 UTC (13 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.33: +2 -1 lines
Diff to previous 1.33
add support for # as a comment initiator in gene functions

Revision 1.33 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Dec 16 17:00:15 2006 UTC (13 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.32: +1 -1 lines
Diff to previous 1.32
changes to add_assertions_of_function (put only fig in roles) and a faster check_subsystems

Revision 1.32 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jun 2 20:32:53 2006 UTC (13 years, 10 months ago) by overbeek
Branch: MAIN
Changes since 1.31: +2 -1 lines
Diff to previous 1.31
remove use of UserModels

Revision 1.31 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 5 18:56:37 2005 UTC (14 years, 3 months ago) by olson
Branch: MAIN
CVS Tags: caBIG-05Apr06-00, caBIG-13Feb06-00
Changes since 1.30: +17 -0 lines
Diff to previous 1.30
Add license words.

Revision 1.30 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Oct 24 21:50:35 2005 UTC (14 years, 5 months ago) by overbeek
Branch: MAIN
CVS Tags: caBIG-00-00-00
Changes since 1.29: +0 -1 lines
Diff to previous 1.29
Assorted relative-path fixes.

remove length check in indexing function assignments.

Revision 1.29 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Oct 21 08:44:47 2005 UTC (14 years, 5 months ago) by parrello
Branch: MAIN
Changes since 1.28: +14 -13 lines
Diff to previous 1.28
Changed so that long assignments are not converted to roles.

Revision 1.28 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Oct 21 08:31:03 2005 UTC (14 years, 5 months ago) by parrello
Branch: MAIN
Changes since 1.27: +1 -1 lines
Diff to previous 1.27
Removed the length check on functional assignments.

Revision 1.27 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 26 20:14:06 2005 UTC (14 years, 8 months ago) by parrello
Branch: MAIN
CVS Tags: caBIG-dataload-0
Changes since 1.26: +1 -1 lines
Diff to previous 1.26
*** empty log message ***

Revision 1.26 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 28 23:02:07 2005 UTC (14 years, 9 months ago) by overbeek
Branch: MAIN
CVS Tags: merge-trunktag-bobdev_news-2, merge-trunktag-bodev_news-3
Changes since 1.25: +3 -3 lines
Diff to previous 1.25
a bad bug in add_assertions_of_function

Revision 1.25 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 22 21:04:44 2005 UTC (14 years, 9 months ago) by parrello
Branch: MAIN
CVS Tags: merge-trunktag-bobdev_news-1
Changes since 1.24: +161 -157 lines
Diff to previous 1.24
Replaced tabs with spaces to make indenting device-independent.
Added trace messages.

Revision 1.24 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jun 12 08:50:49 2005 UTC (14 years, 9 months ago) by parrello
Branch: MAIN
CVS Tags: Root-bobdev_news
Branch point for: Branch-bobdev_news
Changes since 1.23: +1 -2 lines
Diff to previous 1.23
Fixed subroutine in add_assertions_of_function that attempted to get a db handle from a DB handle object.

Revision 1.23 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jun 10 06:15:15 2005 UTC (14 years, 9 months ago) by parrello
Branch: MAIN
Changes since 1.22: +155 -152 lines
Diff to previous 1.22
Converted to use tracing.

Revision 1.22 - (view) (download) (as text) (annotate) - [select for diffs]
Thu May 12 21:04:30 2005 UTC (14 years, 10 months ago) by olson
Branch: MAIN
Changes since 1.21: +1 -1 lines
Diff to previous 1.21
Remove length restriction on functional
assignments.

Revision 1.21 - (view) (download) (as text) (annotate) - [select for diffs]
Sat May 7 00:54:13 2005 UTC (14 years, 10 months ago) by overbeek
Branch: MAIN
Changes since 1.20: +6 -1 lines
Diff to previous 1.20
multifunctional roles are roles

Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Mar 17 20:00:37 2005 UTC (15 years ago) by overbeek
Branch: MAIN
CVS Tags: efrank-preMakefileToStandardMk
Changes since 1.19: +2 -1 lines
Diff to previous 1.19
fixes to extract_genomes

Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Feb 27 01:48:11 2005 UTC (15 years, 1 month ago) by overbeek
Branch: MAIN
Changes since 1.18: +1 -1 lines
Diff to previous 1.18
fix to add_assertions_of_function

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Feb 27 01:42:56 2005 UTC (15 years, 1 month ago) by overbeek
Branch: MAIN
Changes since 1.17: +2 -3 lines
Diff to previous 1.17
fix to add_assertions_of_function

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Feb 27 01:39:55 2005 UTC (15 years, 1 month ago) by overbeek
Branch: MAIN
Changes since 1.16: +3 -2 lines
Diff to previous 1.16
major changes in notion of function and load_attributes

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jan 28 03:17:53 2005 UTC (15 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.15: +1 -1 lines
Diff to previous 1.15
fix to add_assertions_of_function

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jan 27 18:28:29 2005 UTC (15 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.14: +1 -1 lines
Diff to previous 1.14
fix extend_subsys.cgi

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Dec 25 16:08:58 2004 UTC (15 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.13: +27 -9 lines
Diff to previous 1.13
check rows before copy

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Dec 25 06:15:36 2004 UTC (15 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.12: +2 -2 lines
Diff to previous 1.12
fix add_assertions_of_function

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Dec 16 22:57:43 2004 UTC (15 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.11: +3 -0 lines
Diff to previous 1.11
fixes to assigned_function

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Dec 7 20:10:22 2004 UTC (15 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.10: +0 -2 lines
Diff to previous 1.10
fix bad deletion code in add_assertions_of_function

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Oct 16 20:42:28 2004 UTC (15 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.9: +1 -0 lines
Diff to previous 1.9
fixes to generalize chromosomal_clusters.cgi for UniProt

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Apr 19 11:36:40 2004 UTC (15 years, 11 months ago) by overbeek
Branch: MAIN
Changes since 1.8: +1 -0 lines
Diff to previous 1.8
fix a bad bug in assignment permissions

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Mar 25 21:42:21 2004 UTC (16 years ago) by overbeek
Branch: MAIN
Changes since 1.7: +23 -21 lines
Diff to previous 1.7
Translate backslashes to spaces in an assigned function to solve a possible PostGres issue. -- /gdp

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jan 27 21:57:11 2004 UTC (16 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.6: +2 -2 lines
Diff to previous 1.6
turn off messages in add_assertions_of_function

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jan 4 02:13:17 2004 UTC (16 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.5: +1 -1 lines
Diff to previous 1.5
remain copy message from add_assertions_of_function

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Dec 30 14:21:12 2003 UTC (16 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.4: +2 -2 lines
Diff to previous 1.4
use FIG/Tmp as sort work directory

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Dec 26 04:25:44 2003 UTC (16 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.3: +72 -24 lines
Diff to previous 1.3
defer indexes until after complete load

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Dec 20 15:19:21 2003 UTC (16 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.2: +9 -0 lines
Diff to previous 1.2
for incremental additions to the DB, delete old versions of things

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Dec 4 16:15:12 2003 UTC (16 years, 4 months ago) by overbeek
Branch: MAIN
CVS Tags: delong-01, delong-02
Changes since 1.1: +2 -2 lines
Diff to previous 1.1
fixes from G5 at Fonsteins

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 1 20:46:40 2003 UTC (16 years, 4 months ago) by efrank
Branch: MAIN
CVS Tags: V00-00-00, V00-00-01

Makefile:
	get it to work with the release tools

All the rest:
	had to rename foo to foo.pl so that makefiles could recognize
	perl source from, say, Makefiles and READMEs

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