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Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Feb 5 03:54:42 2008 UTC (11 years, 10 months ago) by parrello
Branch: MAIN
CVS Tags: HEAD, mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_2008_0924, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912, rast_release_2008_09_29
Changes since 1.19: +1 -2 lines
Diff to previous 1.19
Removed obsolete use clause.

Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Oct 3 02:49:24 2006 UTC (13 years, 2 months ago) by parrello
Branch: MAIN
Changes since 1.18: +1 -0 lines
Diff to previous 1.18
Fixed default trace level.

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jan 15 21:29:41 2006 UTC (13 years, 10 months ago) by parrello
Branch: MAIN
CVS Tags: caBIG-05Apr06-00, caBIG-13Feb06-00
Changes since 1.17: +7 -10 lines
Diff to previous 1.17
Converted to use "StandardSetup".

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Dec 7 19:38:22 2005 UTC (14 years ago) by golsen
Branch: MAIN
Changes since 1.16: +1 -1 lines
Diff to previous 1.16
Don't mean to be pedantic, but I figured that I might as well add newlines
at the end of text files that lack one.  Identified with a script:

/bin/sh -O extglob -c 'for f in */*.@(c|css|html|js|pl|pm|py|TXT); do perl -e '"'"'while(<>) {$s = ! /\n$/} exit $s'"'"' $f || echo $f; done'

fixed with a script:

/bin/sh
for file in _list_; do echo "" >> $file; done

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 5 18:56:37 2005 UTC (14 years ago) by olson
Branch: MAIN
Changes since 1.15: +17 -0 lines
Diff to previous 1.15
Add license words.

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Sep 12 00:24:37 2005 UTC (14 years, 3 months ago) by parrello
Branch: MAIN
CVS Tags: caBIG-00-00-00, caBIG-dataload-0
Changes since 1.14: +6 -3 lines
Diff to previous 1.14
Fixed documentation.
Added back the ability to generate TBL output files.

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Sep 1 09:39:31 2005 UTC (14 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.13: +12 -45 lines
Diff to previous 1.13
Cleaned up transaction processing.

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 15 21:36:28 2005 UTC (14 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.12: +1 -1 lines
Diff to previous 1.12
Fixed an error in the "start=" parameter.

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 15 21:08:56 2005 UTC (14 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.11: +19 -3 lines
Diff to previous 1.11
Added the ability to start in the middle of a transaction run.

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 15 20:42:31 2005 UTC (14 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.10: +1 -1 lines
Diff to previous 1.10
*** empty log message ***

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 15 20:40:22 2005 UTC (14 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.9: +6 -0 lines
Diff to previous 1.9
Added a check-only version of the attribute command.

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 15 20:29:10 2005 UTC (14 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.8: +7 -0 lines
Diff to previous 1.8
Added a command fort copying attributes from old features to their replacements.

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Aug 12 09:33:50 2005 UTC (14 years, 4 months ago) by parrello
Branch: MAIN
Changes since 1.7: +22 -4 lines
Diff to previous 1.7
Added a new command to extract the old alias values for the changed features and move them to the new features.

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 11 16:36:01 2005 UTC (14 years, 4 months ago) by parrello
Branch: MAIN
Changes since 1.6: +7 -3 lines
Diff to previous 1.6
Changed the "fix" command to fix incorrect locations and translations. Added "check" command that looks for errors but does not fix them.

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 11 05:16:46 2005 UTC (14 years, 4 months ago) by parrello
Branch: MAIN
Changes since 1.5: +4 -2 lines
Diff to previous 1.5
Fixed a bug in the handling of the "annotate" command.

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 11 04:14:45 2005 UTC (14 years, 4 months ago) by parrello
Branch: MAIN
Changes since 1.4: +11 -1 lines
Diff to previous 1.4
Added a "noAlias" option to handle the lack of an alias field in the input files.

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 11 03:19:31 2005 UTC (14 years, 4 months ago) by parrello
Branch: MAIN
Changes since 1.3: +10 -0 lines
Diff to previous 1.3
Updated documentation.

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 11 03:10:35 2005 UTC (14 years, 4 months ago) by parrello
Branch: MAIN
Changes since 1.2: +31 -478 lines
Diff to previous 1.2
Converted the transaction processor to an object-oriented module in order to simplify the task of programming the ever-growing number of scripts that use them.

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Aug 9 00:57:48 2005 UTC (14 years, 4 months ago) by parrello
Branch: MAIN
Changes since 1.1: +21 -6 lines
Diff to previous 1.1
Added an option to allow wrapping each genome's transactions in a database transaction.

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 8 20:13:08 2005 UTC (14 years, 4 months ago) by parrello
Branch: MAIN
New script to process transaction files containing commands to add, delete, and replace features.

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