[Bio] / FigKernelScripts / TransactFeatures.pl Repository:
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Diff of /FigKernelScripts/TransactFeatures.pl

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revision 1.5, Thu Aug 11 04:14:45 2005 UTC revision 1.6, Thu Aug 11 05:16:46 2005 UTC
# Line 187  Line 187 
187      $controlBlock = CountTransactions->new($options, $mainCommand, @parameters);      $controlBlock = CountTransactions->new($options, $mainCommand, @parameters);
188  } elsif ($mainCommand eq 'process') {  } elsif ($mainCommand eq 'process') {
189      $controlBlock = ApplyTransactions->new($options, $mainCommand, @parameters);      $controlBlock = ApplyTransactions->new($options, $mainCommand, @parameters);
190    } elsif ($mainCommand eq 'annotate') {
191        $controlBlock = AnnotateTransactions->new($options, $mainCommand, @parameters);
192  } elsif ($mainCommand eq 'fix') {  } elsif ($mainCommand eq 'fix') {
193      $controlBlock = FixTransactions->new($options, $mainCommand, @parameters);      $controlBlock = FixTransactions->new($options, $mainCommand, @parameters);
194  } else {  } else {
# Line 253  Line 255 
255              }              }
256              # Terminate processing for this genome.              # Terminate processing for this genome.
257              my $orgStats = $controlBlock->EndGenome();              my $orgStats = $controlBlock->EndGenome();
258              Trace("Statistics for $genomeID\n\n" . $orgStats->Show()) if T(3);              Trace("Statistics for $genomeID\n\n" . $orgStats->Show() . "\n") if T(3);
259              # Close the transaction input file.              # Close the transaction input file.
260              close TRANS;              close TRANS;
261          }          }
262      }      }
263      # Terminate processing.      # Terminate processing.
264      $controlBlock->Teardown();      $controlBlock->Teardown();
265      Trace("Statistics for this run\n\n" . $controlBlock->Show()) if T(1);      Trace("Statistics for this run\n\n" . $controlBlock->Show() . "\n") if T(1);
266      Trace("Processing complete.") if T(1);      Trace("Processing complete.") if T(1);
267  }  }
268    

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