[Bio] / FigKernelScripts / TransactFeatures.pl Repository:
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revision 1.18, Sun Jan 15 21:29:41 2006 UTC revision 1.20, Tue Feb 5 03:54:42 2008 UTC
# Line 185  Line 185 
185    
186  use strict;  use strict;
187  use Tracer;  use Tracer;
 use DocUtils;  
188  use Cwd;  use Cwd;
189  use File::Copy;  use File::Copy;
190  use File::Path;  use File::Path;
# Line 197  Line 196 
196  use FudgeTransactions;  use FudgeTransactions;
197    
198  # Get the command-line options.  # Get the command-line options.
199  my ($options, @parameters) = StandardSetup(["DocUtils"],  my ($options, @parameters) = StandardSetup(["FIG"],
200                      { safe => [0, "use database transactions"],                      { safe => [0, "use database transactions"],
201                          trace => [2, "trace level"],
202                        noAlias => [0, "do not expect aliases in CHANGE transactions"],                        noAlias => [0, "do not expect aliases in CHANGE transactions"],
203                        start => [' ', "start with this genome"],                        start => [' ', "start with this genome"],
204                        tblFiles => [0, "output TBL files containing the corrected IDs"] },                        tblFiles => [0, "output TBL files containing the corrected IDs"] },

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