[Bio] / FigKernelScripts / PickGeneBoundariesTest.pl Repository:
ViewVC logotype

View of /FigKernelScripts/PickGeneBoundariesTest.pl

Parent Directory Parent Directory | Revision Log Revision Log


Revision 1.1 - (download) (as text) (annotate)
Tue Feb 5 02:58:40 2008 UTC (11 years, 9 months ago) by parrello
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, myrast_rel40, rast_rel_2008_06_16, mgrast_dev_05262011, rast_rel_2008_12_18, mgrast_dev_04082011, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, mgrast_version_3_2, mgrast_dev_12152011, rast_rel_2008_04_23, mgrast_dev_06072011, rast_rel_2008_09_30, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, rast_rel_2009_02_05, rast_rel_2011_0119, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, rast_rel_2008_10_09, mgrast_dev_04012011, rast_release_2008_09_29, mgrast_rel_2008_0806, mgrast_rel_2008_0923, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2010_0827, mgrast_rel_2008_1110, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, mgrast_rel_2008_0917, rast_rel_2008_10_29, mgrast_dev_04052011, mgrast_dev_02222011, rast_rel_2009_03_26, mgrast_dev_10262011, rast_rel_2008_11_24, rast_rel_2008_08_07, HEAD
Test script for backfill.

#!/usr/bin/perl -w
use strict;
use Tracer;

use FIGV;
use FullLocation;
use Tracer;
TSetup("4 FullLocation", "+>c:/tmp/trace.log");
my $genome = "666666.550";
my $fig = FIGV->new("m:/disks/anno/nmpdr/virtualData/666666.550");
my @tests = ( "NC_000964_4214500_4214599", "NC_000964_1791944_1793655",
             "NC_000964_4214599_4214500", "NC_000964_100_199",
             "NC_000964_199_100");
for my $test (@tests) {
    my $floc = FullLocation->new($fig, "666666.550", $test);
    Trace("Processing " . $floc->SeedString) if T(2);
    my $rc = $floc->PickGeneBoundaries();
    Trace(($rc ? "Found " : "Search failed for ") . $floc->SeedString) if T(2);
}    

1;


MCS Webmaster
ViewVC Help
Powered by ViewVC 1.0.3