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Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Nov 11 17:49:30 2010 UTC (9 years, 4 months ago) by disz
Branch: MAIN
CVS Tags: HEAD, mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912
Changes since 1.9: +1 -1 lines
Diff to previous 1.9
FigFam 6 digit problem

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Oct 29 17:10:34 2010 UTC (9 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.8: +1 -1 lines
Diff to previous 1.8
Update to FF processing

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 13 16:53:14 2010 UTC (9 years, 8 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2010_0827, rast_rel_2010_0928
Changes since 1.7: +0 -1 lines
Diff to previous 1.7
sort, not cat

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 13 16:52:41 2010 UTC (9 years, 8 months ago) by olson
Branch: MAIN
Changes since 1.6: +76 -16 lines
Diff to previous 1.6
Hm. Use IPC::Open3 instead of IPC::Run in get_oligos, since we somehow lost data with IPC::Run. Bizarre.

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 13 14:35:55 2010 UTC (9 years, 8 months ago) by olson
Branch: MAIN
Changes since 1.5: +14 -2 lines
Diff to previous 1.5
add support for alternative sort (grr, debian sort != redhat sort)

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 13 12:06:06 2010 UTC (9 years, 8 months ago) by olson
Branch: MAIN
Changes since 1.4: +13 -5 lines
Diff to previous 1.4
More fixes; only generate 8mers for OTUs; add skipotu option.

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jul 12 21:06:53 2010 UTC (9 years, 8 months ago) by olson
Branch: MAIN
Changes since 1.3: +47 -1 lines
Diff to previous 1.3
Sort get_oligos output in 10M oligo chunks with an explicit merge when done, so we
can better overlap the actual get_oligos computation with the sorts.

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jul 12 19:30:27 2010 UTC (9 years, 8 months ago) by olson
Branch: MAIN
Changes since 1.2: +32 -2 lines
Diff to previous 1.2
Bunch of figfam generation optimizations.

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Apr 9 17:06:21 2010 UTC (9 years, 11 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2010_0526
Changes since 1.1: +2 -1 lines
Diff to previous 1.1
Fix bug with overloaded hashes.

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Nov 24 13:02:57 2009 UTC (10 years, 4 months ago) by overbeek
Branch: MAIN
CVS Tags: rast_rel_2010_0118
needed for kmer update

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