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revision 1.9, Mon Jul 12 19:39:05 2010 UTC revision 1.10, Mon Jul 12 20:04:03 2010 UTC
# Line 113  Line 113 
113  foreach my $i (7..12)  foreach my $i (7..12)
114  {  {
115      mkdir("$newD/Merged/$i",0777) || die "could not make $newD/Merged/$i: $!";      mkdir("$newD/Merged/$i",0777) || die "could not make $newD/Merged/$i: $!";
116      my $h = start(["FFB2_merge_oligos $newD/Kmers/$i/good.oligos $newD/PhyloSigs/$i/good.oligos"], "|",      my $h = start(["FFB2_merge_oligos", "$newD/Kmers/$i/good.oligos", "$newD/PhyloSigs/$i/good.oligos"], "|",
117                    ["FFB2_create_binary_kmers", "-l", $i, "-s", "4,2", "-", "$newD/Merged/$i/table.binary"]);                    ["FFB2_create_binary_kmers", "-l", $i, "-s", "4,2", "-", "$newD/Merged/$i/table.binary"]);
118    
119      push(@merge_handles, [$h, $i]);      push(@merge_handles, [$h, $i]);
# Line 131  Line 131 
131    
132  my $load1 = start(["FFB2_load_oligo_index", "$newD/function.index",  "$newD/FRI.db"]);  my $load1 = start(["FFB2_load_oligo_index", "$newD/function.index",  "$newD/FRI.db"]);
133  my $load2 = start(["FFB2_load_oligo_index", "$newD/setI", "$newD/setI.db"]);  my $load2 = start(["FFB2_load_oligo_index", "$newD/setI", "$newD/setI.db"]);
134  my $build = start(["build_prok_nonff_fasta $newD > $newD/extra_prok_seqs.fasta"]);  my $build = start(["build_prok_nonff_fasta", "$newD"],  ">", "$newD/extra_prok_seqs.fasta");
135    
136    
137  #foreach my $i (7..12)  #foreach my $i (7..12)
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