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revision 1.4, Thu Jan 14 16:48:56 2010 UTC revision 1.5, Thu Apr 1 19:28:40 2010 UTC
# Line 34  Line 34 
34  {  {
35      &FIG::run("FFB2_create_binary_kmers -s 4,2 $newD/Merged/$i/merged.oligos $newD/Merged/$i/table.binary");      &FIG::run("FFB2_create_binary_kmers -s 4,2 $newD/Merged/$i/merged.oligos $newD/Merged/$i/table.binary");
36  }  }
37  &FIG::run("build_prok_nonff_fasta > $newD/extra_prok_seqs.fasta");  
38    &FIG::run("FFB2_run_tests $newD");
39    &FIG::run("FFB2_compare_tests $oldD $newD");
40    &FIG::run("build_prok_nonff_fasta $newD > $newD/extra_prok_seqs.fasta");
41  &FIG::run("formatdb -p T -i $newD/extra_prok_seqs.fasta");  &FIG::run("formatdb -p T -i $newD/extra_prok_seqs.fasta");

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