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revision 1.16, Tue Sep 14 19:10:59 2010 UTC revision 1.17, Fri Oct 29 17:10:34 2010 UTC
# Line 111  Line 111 
111      {      {
112          my $outfile = "$FIG_Config::temp/ffb2_xx.$$.$i";          my $outfile = "$FIG_Config::temp/ffb2_xx.$$.$i";
113    
114          my $h = start(['FFB2_xx', 8,  "$newD/setI", $n_get_prots, $i, $mchost, $mcport],          my $h = start(['FFB2_xx', 12,  "$newD/setI", $n_get_prots, $i, $mchost, $mcport],
115                        "<", "/dev/null", ">", $outfile);                        "<", "/dev/null", ">", $outfile);
116          push(@handles, [$i, $h, $outfile]);          push(@handles, [$i, $h, $outfile]);
117      }      }
# Line 124  Line 124 
124    
125      my @files = map { $_->[2] } @handles;      my @files = map { $_->[2] } @handles;
126      print STDERR "Merging phylo @files\n";      print STDERR "Merging phylo @files\n";
127      &FIG::run("sort -S 2G -m @files | FFB2_usable_motifs $newD/PhyloSigs 8");      &FIG::run("sort -S 2G -m @files | FFB2_usable_motifs $newD/PhyloSigs 7-12");
128    
129      #&FIG::run("FFB2_get_prots $newD/ProtsByGenomeSet $newD/setI");      #&FIG::run("FFB2_get_prots $newD/ProtsByGenomeSet $newD/setI");
130      #&FIG::run("FFB2_get_prot_gs_oligos $newD/ProtsByGenomeSet 12 | sort $sort_args | FFB2_usable_motifs $newD/PhyloSigs");      #&FIG::run("FFB2_get_prot_gs_oligos $newD/ProtsByGenomeSet 12 | sort $sort_args | FFB2_usable_motifs $newD/PhyloSigs");

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