[Bio] / FigKernelScripts / CheckCELfiles.R Repository:
ViewVC logotype

View of /FigKernelScripts/CheckCELfiles.R

Parent Directory Parent Directory | Revision Log Revision Log


Revision 1.1 - (download) (annotate)
Fri May 7 21:17:43 2010 UTC (9 years, 6 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_08112011, mgrast_dev_08022011, rast_rel_2014_0912, myrast_rel40, mgrast_dev_05262011, mgrast_dev_04082011, rast_rel_2010_0928, mgrast_version_3_2, mgrast_dev_12152011, mgrast_dev_06072011, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2011_0119, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, mgrast_dev_04012011, rast_rel_2010_0827, myrast_33, rast_rel_2011_0928, mgrast_dev_04052011, mgrast_dev_02222011, mgrast_dev_10262011, HEAD
R script to find chip name from CEL files

args = commandArgs(TRUE);
if (length(args) != 1) { print("usage:  Rscript CheckCELfiles.R experiment_dir"); q() }
experiments_dir = args[1];

library(affy)

file2cdf = c();
for (file in list.celfiles(experiments_dir, full.names=TRUE))
{
	file2cdf = rbind(file2cdf,c(file, whatcdf(file, compress=TRUE)));
}

uniquecdf = unique(file2cdf[,2]);

if (length(uniquecdf == 1)) {
   print(c("Unique CDF: ", uniquecdf));
} else {
     print(file2cdf)
}

MCS Webmaster
ViewVC Help
Powered by ViewVC 1.0.3