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revision 1.2, Mon Jun 27 17:13:58 2011 UTC revision 1.3, Sat Jul 9 08:08:26 2011 UTC
# Line 99  Line 99 
99      &run("svr_align_seqs -l -z < $tmp1 > $tmp2");      &run("svr_align_seqs -l -z < $tmp1 > $tmp2");
100  #    print "look in $tmp1 and $tmp2\n";  #    print "look in $tmp1 and $tmp2\n";
101      my @ali_seqs = &gjoseqlib::read_fasta($tmp2);      my @ali_seqs = &gjoseqlib::read_fasta($tmp2);
102  #   unlink($tmp1,$tmp2);      unlink($tmp1,$tmp2);
103    
104      my $ln = length($ali_seqs[0]->[2]);      my $ln = length($ali_seqs[0]->[2]);
105      my $i=0;      my $i=0;

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