[Bio] / FigKernelScripts / CSA_make_unique_kmers.pl Repository:
ViewVC logotype

Diff of /FigKernelScripts/CSA_make_unique_kmers.pl

Parent Directory Parent Directory | Revision Log Revision Log | View Patch Patch

revision 1.1, Thu Jun 16 14:38:26 2011 UTC revision 1.2, Sat Jun 18 21:48:07 2011 UTC
# Line 18  Line 18 
18  foreach $_ (@contigs) { $sz += length($_->[2]) }  foreach $_ (@contigs) { $sz += length($_->[2]) }
19  my $tmp_dir = '.';  my $tmp_dir = '.';
20  my $tmp1    = "$tmp_dir/tmp1_$$.fasta";  my $tmp1    = "$tmp_dir/tmp1_$$.fasta";
21  open(TMP,"| sort | perl CSA_filter_unique.pl > $tmp1 2> $rpts") || die "could not set up pipeline";  open(TMP,"| sort | CSA_filter_unique > $tmp1 2> $rpts") || die "could not set up pipeline";
22  foreach $_ (@contigs)  foreach $_ (@contigs)
23  {  {
24      my($id,undef,$seq) = @$_;      my($id,undef,$seq) = @$_;

Legend:
Removed from v.1.1  
changed lines
  Added in v.1.2

MCS Webmaster
ViewVC Help
Powered by ViewVC 1.0.3