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Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jul 18 22:58:12 2011 UTC (8 years, 7 months ago) by overbeek
Branch: MAIN
CVS Tags: mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_release_3_1_1, rast_rel_2011_0928
Changes since 1.14: +12 -3 lines
Diff to previous 1.14
fixes to VCS stuff

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jul 15 12:51:04 2011 UTC (8 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.13: +1 -1 lines
Diff to previous 1.13
minor fix

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jul 15 01:31:50 2011 UTC (8 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.12: +1 -1 lines
Diff to previous 1.12
put loc in seq hdrs for prot alignments

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jul 15 01:24:24 2011 UTC (8 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.11: +1 -1 lines
Diff to previous 1.11
put loc in seq hdrs for prot alignments

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jul 15 01:13:03 2011 UTC (8 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.10: +6 -4 lines
Diff to previous 1.10
put out contigs

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 30 22:18:21 2011 UTC (8 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.9: +2 -2 lines
Diff to previous 1.9
put tbl and fasta in snp directory

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 30 17:08:49 2011 UTC (8 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.8: +11 -4 lines
Diff to previous 1.8
connections to alignments is better

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 29 20:57:45 2011 UTC (8 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.7: +77 -40 lines
Diff to previous 1.7
build snp features

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 29 15:07:57 2011 UTC (8 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.6: +1 -0 lines
Diff to previous 1.6
unlink temporary file

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 29 15:05:16 2011 UTC (8 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.5: +8 -22 lines
Diff to previous 1.5
faster SNP detection, reduced set of alignments, and html of the SNP alignments

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 28 23:16:27 2011 UTC (8 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.4: +1 -1 lines
Diff to previous 1.4
avoid -z option

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 28 20:57:09 2011 UTC (8 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.3: +1 -1 lines
Diff to previous 1.3
allow white space rather than just tab

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 28 17:47:00 2011 UTC (8 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.2: +35 -24 lines
Diff to previous 1.2
parallelize

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jun 27 17:13:58 2011 UTC (8 years, 8 months ago) by overbeek
Branch: MAIN
CVS Tags: myrast_rel40
Changes since 1.1: +3 -0 lines
Diff to previous 1.1
make part of myRAST distribution

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jun 27 17:05:45 2011 UTC (8 years, 8 months ago) by overbeek
Branch: MAIN
build alignments and SNPs for very close strains

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