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Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Sat May 12 21:22:23 2007 UTC (13 years ago) by overbeek
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, rast_2008_0924, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_release_2008_09_29
Changes since 1.8: +2 -0 lines
Diff to previous 1.8 , to selected 1.1
add make_trimmed_alignment_from_ids

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Sat May 12 20:47:03 2007 UTC (13 years ago) by golsen
Branch: MAIN
Changes since 1.7: +27 -3 lines
Diff to previous 1.7 , to selected 1.1
Modifications to control ordering of sequences in representative sets and
in sequeneces added to an alignment.  Also new options to silently remove
sequences with duplicate ids.

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Sat May 12 20:12:56 2007 UTC (13 years ago) by overbeek
Branch: MAIN
Changes since 1.6: +66 -1 lines
Diff to previous 1.6 , to selected 1.1
add utilities for computing alignments

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Mar 19 20:01:56 2007 UTC (13 years, 2 months ago) by golsen
Branch: MAIN
Changes since 1.5: +2 -2 lines
Diff to previous 1.5 , to selected 1.1
Fix to error message.

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Mar 19 18:58:10 2007 UTC (13 years, 2 months ago) by golsen
Branch: MAIN
Changes since 1.4: +667 -318 lines
Diff to previous 1.4 , to selected 1.1
Change in the representative sequences algorithm.  This could still use
more work.

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Feb 28 21:55:44 2007 UTC (13 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.3: +0 -1 lines
Diff to previous 1.3 , to selected 1.1
remove debugging line from representative_sequences.pm

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Feb 19 14:43:57 2007 UTC (13 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.2: +6 -3 lines
Diff to previous 1.2 , to selected 1.1
update PHOB.pm

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Feb 16 17:41:34 2007 UTC (13 years, 3 months ago) by golsen
Branch: MAIN
Changes since 1.1: +48 -14 lines
Diff to previous 1.1
Major improvement in representative_sequences.pl.  Greatly improved
comments in representative_sequences.pm.

Revision 1.1 - (view) (download) (as text) (annotate) - [selected]
Wed Dec 20 20:49:21 2006 UTC (13 years, 5 months ago) by golsen
Branch: MAIN
Adding representative_sequences.pm

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