[Bio] / FigKernelPackages / representative_sequences.pm Repository:
ViewVC logotype

Log of /FigKernelPackages/representative_sequences.pm

Parent Directory Parent Directory


Links to HEAD: (view) (download) (as text) (annotate)
Links to rast_rel_2008_06_16: (view) (download) (as text) (annotate)
Sticky Tag:

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Sat May 12 21:22:23 2007 UTC (12 years, 10 months ago) by overbeek
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, rast_2008_0924, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_release_2008_09_29
Changes since 1.8: +2 -0 lines
Diff to previous 1.8
add make_trimmed_alignment_from_ids

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Sat May 12 20:47:03 2007 UTC (12 years, 10 months ago) by golsen
Branch: MAIN
Changes since 1.7: +27 -3 lines
Diff to previous 1.7
Modifications to control ordering of sequences in representative sets and
in sequeneces added to an alignment.  Also new options to silently remove
sequences with duplicate ids.

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Sat May 12 20:12:56 2007 UTC (12 years, 10 months ago) by overbeek
Branch: MAIN
Changes since 1.6: +66 -1 lines
Diff to previous 1.6
add utilities for computing alignments

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Mar 19 20:01:56 2007 UTC (13 years ago) by golsen
Branch: MAIN
Changes since 1.5: +2 -2 lines
Diff to previous 1.5
Fix to error message.

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Mar 19 18:58:10 2007 UTC (13 years ago) by golsen
Branch: MAIN
Changes since 1.4: +667 -318 lines
Diff to previous 1.4
Change in the representative sequences algorithm.  This could still use
more work.

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Feb 28 21:55:44 2007 UTC (13 years, 1 month ago) by overbeek
Branch: MAIN
Changes since 1.3: +0 -1 lines
Diff to previous 1.3
remove debugging line from representative_sequences.pm

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Feb 19 14:43:57 2007 UTC (13 years, 1 month ago) by overbeek
Branch: MAIN
Changes since 1.2: +6 -3 lines
Diff to previous 1.2
update PHOB.pm

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Feb 16 17:41:34 2007 UTC (13 years, 1 month ago) by golsen
Branch: MAIN
Changes since 1.1: +48 -14 lines
Diff to previous 1.1
Major improvement in representative_sequences.pl.  Greatly improved
comments in representative_sequences.pm.

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Dec 20 20:49:21 2006 UTC (13 years, 3 months ago) by golsen
Branch: MAIN
Adding representative_sequences.pm

This form allows you to request diffs between any two revisions of this file. For each of the two "sides" of the diff, select a symbolic revision name using the selection box, or choose 'Use Text Field' and enter a numeric revision.

  Diffs between and
  Type of Diff should be a

Sort log by:

MCS Webmaster
ViewVC Help
Powered by ViewVC 1.0.3