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Revision 1.44 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Mar 16 18:24:57 2008 UTC (11 years, 8 months ago) by redwards
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, rast_2008_0924, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_release_2008_09_29
Changes since 1.43: +15 -0 lines
Diff to previous 1.43 , to selected 1.1
adding a randomizer function

Revision 1.43 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Feb 5 02:05:47 2008 UTC (11 years, 10 months ago) by parrello
Branch: MAIN
Changes since 1.42: +30 -28 lines
Diff to previous 1.42 , to selected 1.1
Changed POD heading levels.

Revision 1.42 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jan 14 18:15:43 2007 UTC (12 years, 11 months ago) by redwards
Branch: MAIN
Changes since 1.41: +1 -1 lines
Diff to previous 1.41 , to selected 1.1
fixing a warning error

Revision 1.41 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Oct 10 00:51:40 2006 UTC (13 years, 2 months ago) by redwards
Branch: MAIN
Changes since 1.40: +2 -2 lines
Diff to previous 1.40 , to selected 1.1
redirecting Spreadsheet::WriteExcel

Revision 1.40 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jul 19 21:57:47 2006 UTC (13 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.39: +7 -3 lines
Diff to previous 1.39 , to selected 1.1
REA: Getting rid of crytptic error message

Revision 1.39 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 20 03:34:43 2006 UTC (13 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.38: +64 -23 lines
Diff to previous 1.38 , to selected 1.1
RAE: Updating table writing in excel to deal with merged cells

Revision 1.38 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jun 19 21:19:22 2006 UTC (13 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.37: +54 -31 lines
Diff to previous 1.37 , to selected 1.1
RAE: Simplifying making excel tables

Revision 1.37 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jun 19 04:05:21 2006 UTC (13 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.36: +16 -0 lines
Diff to previous 1.36 , to selected 1.1
RAE: updating the excel functions

Revision 1.36 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 14 01:14:19 2006 UTC (13 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.35: +7 -1 lines
Diff to previous 1.35 , to selected 1.1
RAE: Adding excel files to display_subsys

Revision 1.35 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 6 02:25:37 2006 UTC (13 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.34: +9 -2 lines
Diff to previous 1.34 , to selected 1.1
RAE: adding more to heatmap, and removing the contigs for environmental samples

Revision 1.34 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 6 00:58:23 2006 UTC (13 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.33: +41 -2 lines
Diff to previous 1.33 , to selected 1.1
RAE: Initial release of a new interface that plots a heatmap of proteins that are in subsystems. The initial release is just based on a single attribute (ss_connections), but I hope to extend it to mapping on different things. Makes pretty tables though!

Revision 1.33 - (view) (download) (as text) (annotate) - [select for diffs]
Wed May 10 15:47:57 2006 UTC (13 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.32: +2 -2 lines
Diff to previous 1.32 , to selected 1.1
RAE: adding new excel functions

Revision 1.32 - (view) (download) (as text) (annotate) - [select for diffs]
Sun May 7 20:10:07 2006 UTC (13 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.31: +138 -50 lines
Diff to previous 1.31 , to selected 1.1
RAE: Updating excel writing functions

Revision 1.31 - (view) (download) (as text) (annotate) - [select for diffs]
Sat May 6 22:04:12 2006 UTC (13 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.30: +219 -0 lines
Diff to previous 1.30 , to selected 1.1
RAE: Adding writing excel tables to raelib, html, and initial trial in select.cgi

Revision 1.30 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Feb 10 00:39:30 2006 UTC (13 years, 10 months ago) by overbeek
Branch: MAIN
Changes since 1.29: +22 -0 lines
Diff to previous 1.29 , to selected 1.1
RAE: Updating organisms.cgi for more information per organim

Revision 1.29 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Feb 5 01:08:16 2006 UTC (13 years, 10 months ago) by overbeek
Branch: MAIN
CVS Tags: caBIG-05Apr06-00, caBIG-13Feb06-00
Changes since 1.28: +1 -1 lines
Diff to previous 1.28 , to selected 1.1
RAE: Swtiched to using SQL Count for the number of contigs

Revision 1.28 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 5 19:06:30 2005 UTC (14 years ago) by olson
Branch: MAIN
Changes since 1.27: +17 -0 lines
Diff to previous 1.27 , to selected 1.1
Added license words.

Revision 1.27 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Oct 3 20:05:34 2005 UTC (14 years, 2 months ago) by redwards
Branch: MAIN
CVS Tags: caBIG-00-00-00, caBIG-dataload-0
Changes since 1.26: +49 -2 lines
Diff to previous 1.26 , to selected 1.1
Initial release of cookies code, including myseed

Revision 1.26 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Aug 5 16:22:53 2005 UTC (14 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.25: +1 -1 lines
Diff to previous 1.25 , to selected 1.1
subsystems by homology really by homology

Revision 1.25 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Aug 5 15:37:14 2005 UTC (14 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.24: +1 -1 lines
Diff to previous 1.24 , to selected 1.1
minor change to add empty fast records

Revision 1.24 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 4 22:35:28 2005 UTC (14 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.23: +5 -2 lines
Diff to previous 1.23 , to selected 1.1
Counting subsystems

Revision 1.23 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jul 11 21:25:03 2005 UTC (14 years, 5 months ago) by redwards
Branch: MAIN
CVS Tags: merge-trunktag-bodev_news-3
Changes since 1.22: +46 -0 lines
Diff to previous 1.22 , to selected 1.1
changing raedraw and raelib

Revision 1.22 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jul 10 22:48:23 2005 UTC (14 years, 5 months ago) by redwards
Branch: MAIN
Changes since 1.21: +1 -1 lines
Diff to previous 1.21 , to selected 1.1
sorting scrolling subsystem list

Revision 1.21 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Jul 9 19:59:23 2005 UTC (14 years, 5 months ago) by redwards
Branch: MAIN
Changes since 1.20: +43 -1 lines
Diff to previous 1.20 , to selected 1.1
Initial release of subsys_vectors.cgi

Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jun 10 16:43:27 2005 UTC (14 years, 6 months ago) by redwards
Branch: MAIN
CVS Tags: Root-bobdev_news, merge-bobdev_news-1, merge-bobdev_news-2, merge-trunktag-bobdev_news-1, merge-trunktag-bobdev_news-2
Branch point for: Branch-bobdev_news
Changes since 1.19: +1 -1 lines
Diff to previous 1.19 , to selected 1.1
minor changes to pir.cgi

Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jun 10 16:12:53 2005 UTC (14 years, 6 months ago) by redwards
Branch: MAIN
Changes since 1.18: +1 -1 lines
Diff to previous 1.18 , to selected 1.1
updating raelib

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jun 10 15:36:37 2005 UTC (14 years, 6 months ago) by redwards
Branch: MAIN
Changes since 1.17: +82 -11 lines
Diff to previous 1.17 , to selected 1.1
adding correspondence.cgi

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Thu May 26 18:15:59 2005 UTC (14 years, 6 months ago) by redwards
Branch: MAIN
Changes since 1.16: +150 -0 lines
Diff to previous 1.16 , to selected 1.1
Added GenBank method to raelib.pm

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Wed May 25 00:49:39 2005 UTC (14 years, 6 months ago) by redwards
Branch: MAIN
Changes since 1.15: +3 -0 lines
Diff to previous 1.15 , to selected 1.1
minor changes to uniprot correspondence

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Tue May 24 23:53:24 2005 UTC (14 years, 6 months ago) by redwards
Branch: MAIN
Changes since 1.14: +3 -3 lines
Diff to previous 1.14 , to selected 1.1
minor changes to uniprot correspondence

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Tue May 24 22:57:19 2005 UTC (14 years, 6 months ago) by redwards
Branch: MAIN
Changes since 1.13: +62 -16 lines
Diff to previous 1.13 , to selected 1.1
added uniprot knowledge base to load_pirsf and raelib

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Wed May 4 03:07:23 2005 UTC (14 years, 7 months ago) by parrello
Branch: MAIN
Changes since 1.12: +1 -1 lines
Diff to previous 1.12 , to selected 1.1
*** empty log message ***

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Apr 9 17:21:15 2005 UTC (14 years, 8 months ago) by redwards
Branch: MAIN
Changes since 1.11: +12 -0 lines
Diff to previous 1.11 , to selected 1.1
changes to seed_ctl and raelib

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Apr 8 20:22:23 2005 UTC (14 years, 8 months ago) by redwards
Branch: MAIN
Changes since 1.10: +1 -1 lines
Diff to previous 1.10 , to selected 1.1
changed tag/value pairs completely. Ooops!

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Apr 7 19:16:10 2005 UTC (14 years, 8 months ago) by redwards
Branch: MAIN
Changes since 1.9: +4 -1 lines
Diff to previous 1.9 , to selected 1.1
many changes to key/value pairs to make them work

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Apr 3 19:25:21 2005 UTC (14 years, 8 months ago) by redwards
Branch: MAIN
Changes since 1.8: +12 -2 lines
Diff to previous 1.8 , to selected 1.1
changes to pir interactions

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Apr 3 19:11:11 2005 UTC (14 years, 8 months ago) by redwards
Branch: MAIN
Changes since 1.7: +2 -1 lines
Diff to previous 1.7 , to selected 1.1
Added a script to load pir superfamilies in the background. This will download all the data and install it. Changed pir.cgi to background this job as it takes a while.

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Apr 3 02:15:15 2005 UTC (14 years, 8 months ago) by redwards
Branch: MAIN
Changes since 1.6: +4 -4 lines
Diff to previous 1.6 , to selected 1.1
changes to pir-seed interactions and new help page

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Mar 20 00:08:39 2005 UTC (14 years, 8 months ago) by redwards
Branch: MAIN
Changes since 1.5: +5 -4 lines
Diff to previous 1.5 , to selected 1.1
changes to organisms.cgi to bring in my seed

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Mar 19 17:45:47 2005 UTC (14 years, 8 months ago) by redwards
Branch: MAIN
Changes since 1.4: +152 -0 lines
Diff to previous 1.4 , to selected 1.1
added rae.cgi, a FigWebServices page with a bunch of crap I wrote.

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Feb 11 21:26:25 2005 UTC (14 years, 10 months ago) by redwards
Branch: MAIN
Changes since 1.3: +40 -0 lines
Diff to previous 1.3 , to selected 1.1
Additions to raelib

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Feb 2 01:07:44 2005 UTC (14 years, 10 months ago) by redwards
Branch: MAIN
Changes since 1.2: +62 -1 lines
Diff to previous 1.2 , to selected 1.1
Minor changes to ubsys.cgi  (mainly commenting) and raelib adding tagvalue

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jan 31 16:58:38 2005 UTC (14 years, 10 months ago) by redwards
Branch: MAIN
Changes since 1.1: +1 -1 lines
Diff to previous 1.1
Minor change to raelib to correctly get the correspondance between uniprot/pir and seed/sprout

Revision 1.1 - (view) (download) (as text) (annotate) - [selected]
Sat Jan 29 20:58:48 2005 UTC (14 years, 10 months ago) by redwards
Branch: MAIN
Added raelib.pm, a bunch of stuff I am using myself. Does not come with a freshness guarantee. Use at own risk.

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