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revision 1.5, Sun Jun 10 17:17:40 2007 UTC revision 1.6, Sun Jun 10 17:24:38 2007 UTC
# Line 44  Line 44 
44  #  print_seq_as_fasta( \*FILEHANDLE, @seq_entry );  #  print_seq_as_fasta( \*FILEHANDLE, @seq_entry );
45  #  print_gb_locus( \*FILEHANDLE, $locus, $def, $accession, $seq );  #  print_gb_locus( \*FILEHANDLE, $locus, $def, $accession, $seq );
46  #  #
47  #  @seqs = pack_alignment( @seqs )  #   @packed_seqs = pack_alignment(  @seqs )
48    #   @packed_seqs = pack_alignment( \@seqs )
49    #  \@packed_seqs = pack_alignment(  @seqs )
50    #  \@packed_seqs = pack_alignment( \@seqs )
51  #  #
52  #  @entry  = subseq_DNA_entry( @seq_entry, $from, $to [, $fix_id] );  #  @entry  = subseq_DNA_entry( @seq_entry, $from, $to [, $fix_id] );
53  #  @entry  = subseq_RNA_entry( @seq_entry, $from, $to [, $fix_id] );  #  @entry  = subseq_RNA_entry( @seq_entry, $from, $to [, $fix_id] );
# Line 682  Line 685 
685  #  Remove columns of alignment gaps from sequences:  #  Remove columns of alignment gaps from sequences:
686  #  #
687  #  @packed_seqs = pack_alignment( @seqs )  #  @packed_seqs = pack_alignment( @seqs )
688    #   @packed_seqs = pack_alignment( \@seqs )
689    #  \@packed_seqs = pack_alignment(  @seqs )
690    #  \@packed_seqs = pack_alignment( \@seqs )
691  #  #
692  #-----------------------------------------------------------------------------  #-----------------------------------------------------------------------------
693    

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