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Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jan 3 19:50:32 2006 UTC (13 years, 11 months ago) by overbeek
Branch: MAIN
CVS Tags: caBIG-05Apr06-00, caBIG-13Feb06-00
Changes since 1.2: +6 -1 lines
Diff to previous 1.2
RAE: Correcting division by zero error

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 5 19:06:30 2005 UTC (14 years ago) by olson
Branch: MAIN
Changes since 1.1: +17 -0 lines
Diff to previous 1.1
Added license words.

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 30 08:44:26 2005 UTC (14 years ago) by golsen
Branch: MAIN
Introduce a different tree printing routine to fid_checked.  This required
a new version of align_with_clustal.pl (= align_with_clustal_2.pl) and a
new tree utilities library (gjonewicklib.pm).

The new tree printer does not require deleting the extra lines (they are
not included in the first place).  This would probably allow some other
restructuring of the code in fid_checked, but I did the minimum.

The other reason for the changes (actually the real reason) is that it is
now possible to introduce midpoint rooting to the tree, and to reorder
the taxa so that the tree is MUCH easier to read (aesthetic tree order).

Also I'm changing it to use a second-generation tree from the alignment,
not just show the guide tree.

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