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Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jan 24 00:05:10 2011 UTC (9 years ago) by golsen
Branch: MAIN
CVS Tags: mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, myrast_33
Changes since 1.7: +83 -40 lines
Diff to previous 1.7
Changes to fix some bugs in GenBank format reading and writing.
Changes to deal with issues in JGI gff files.

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jan 2 18:54:32 2011 UTC (9 years, 1 month ago) by golsen
Branch: MAIN
CVS Tags: rast_rel_2011_0119
Changes since 1.6: +1024 -126 lines
Diff to previous 1.6
Add support for writing GenBank entries.
A few bug fixes to reading entries.
Cleaner code for reading entries.

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 6 20:03:56 2010 UTC (9 years, 2 months ago) by golsen
Branch: MAIN
Changes since 1.5: +4 -0 lines
Diff to previous 1.5
Fix an error that failed to load gjoseqlib under some circumstances that
it was needed.

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 18 19:34:24 2010 UTC (9 years, 6 months ago) by golsen
Branch: MAIN
CVS Tags: rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206
Changes since 1.4: +16 -5 lines
Diff to previous 1.4
Handle BASE COUNT
Handle entries without a date on the LOCUS line.

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Aug 17 20:47:29 2010 UTC (9 years, 6 months ago) by golsen
Branch: MAIN
Changes since 1.3: +52 -0 lines
Diff to previous 1.3
Added access functions for the feature types in an entry, and all of the
features of one or more types.

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Aug 17 20:13:42 2010 UTC (9 years, 6 months ago) by golsen
Branch: MAIN
Changes since 1.2: +346 -215 lines
Diff to previous 1.2
Add an entry-by-entry reader and parser.  Increase flexibility of supplying
DNA to functions that pull out feature DNA sequences and translations.
Other minor changes.

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 16 20:43:27 2010 UTC (9 years, 6 months ago) by gdpusch
Branch: MAIN
Changes since 1.1: +2 -2 lines
Diff to previous 1.1
Fixed two typos.

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 16 20:04:35 2010 UTC (9 years, 6 months ago) by gdpusch
Branch: MAIN
Initial checkin; SAS component.

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