Log of /FigKernelPackages/gjoalignandtree.pm

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Revision 1.7 - (view) (download) (as text) (annotate) - [selected]
Thu Nov 18 22:39:56 2010 UTC (9 years ago) by fangfang
Branch: MAIN
CVS Tags: rast_rel_2010_1206
Changes since 1.6: +1 -1 lines
Diff to previous 1.6

change to verify_db

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Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Nov 11 06:34:10 2010 UTC (9 years, 1 month ago) by fangfang
Branch: MAIN
Changes since 1.5: +2 -2 lines
Diff to previous 1.5 , to selected 1.7

correct arg sequence in extract_with_psiblast

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Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Nov 8 20:26:00 2010 UTC (9 years, 1 month ago) by fangfang
Branch: MAIN
Changes since 1.4: +14 -11 lines
Diff to previous 1.4 , to selected 1.7

add fract_cov option for trim_align_to_median_ends

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Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Nov 8 19:49:39 2010 UTC (9 years, 1 month ago) by fangfang
Branch: MAIN
Changes since 1.3: +1 -0 lines
Diff to previous 1.3 , to selected 1.7

handle the case in which all candidates have either start or end gaps in representative_for_profile

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Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Aug 21 17:43:32 2010 UTC (9 years, 3 months ago) by golsen
Branch: MAIN
CVS Tags: rast_rel_2010_0827, rast_rel_2010_0928
Changes since 1.2: +321 -45 lines
Diff to previous 1.2 , to selected 1.7

Updates and bug fixes.

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Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Apr 12 20:27:23 2010 UTC (9 years, 8 months ago) by fangfang
Branch: MAIN
CVS Tags: rast_rel_2010_0526
Changes since 1.1: +1 -0 lines
Diff to previous 1.1 , to selected 1.7

fixed a small bug in representative_for_profile()

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Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Mar 8 21:43:51 2010 UTC (9 years, 9 months ago) by overbeek
Branch: MAIN
Diff to selected 1.7

support for alignments and trees