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Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 29 04:54:43 2012 UTC (7 years, 3 months ago) by golsen
Branch: MAIN
CVS Tags: HEAD, rast_rel_2014_0729, rast_rel_2014_0912
Changes since 1.10: +12 -4 lines
Diff to previous 1.10
Support for residue color = none.

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 15 16:44:18 2012 UTC (7 years, 3 months ago) by golsen
Branch: MAIN
Changes since 1.9: +35 -2 lines
Diff to previous 1.9
Tweak the style of the display to deal with changes in Safari. Sigh.

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Sat May 12 16:16:08 2012 UTC (7 years, 6 months ago) by fangfang
Branch: MAIN
CVS Tags: mgrast_version_3_2
Changes since 1.8: +6 -1 lines
Diff to previous 1.8
Fixed support for showing literal sequences with spaces and characters that need to be escaped.

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Sat May 12 00:31:05 2012 UTC (7 years, 6 months ago) by golsen
Branch: MAIN
Changes since 1.7: +101 -60 lines
Diff to previous 1.7
Introduce a literal => \%literal_ids to avoid coloring and padding changes
of data to be rendered as is.

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Aug 16 18:48:06 2011 UTC (8 years, 3 months ago) by golsen
Branch: MAIN
CVS Tags: mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_1_2, rast_rel_2011_0928
Changes since 1.6: +1 -1 lines
Diff to previous 1.6
Change − to −

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Aug 16 17:58:16 2011 UTC (8 years, 3 months ago) by golsen
Branch: MAIN
Changes since 1.5: +3 -2 lines
Diff to previous 1.5
Output alignment gaps as − for some browser that does not do true
monospace for <TT> tags.  Fix discovered by RO.

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Dec 1 22:24:14 2010 UTC (9 years ago) by fangfang
Branch: MAIN
CVS Tags: mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, myrast_33, myrast_rel40, rast_rel_2010_1206, rast_rel_2011_0119
Changes since 1.4: +18 -0 lines
Diff to previous 1.4
SAS component

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Aug 25 23:52:44 2009 UTC (10 years, 3 months ago) by golsen
Branch: MAIN
CVS Tags: rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928
Changes since 1.3: +90 -85 lines
Diff to previous 1.3
Fix problem with line wrap in the alignment.
Change all #abc colors to #aabbcc for browser compatibility.

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 25 01:19:29 2009 UTC (10 years, 5 months ago) by golsen
Branch: MAIN
CVS Tags: rast_rel_2009_07_09
Changes since 1.2: +16 -8 lines
Diff to previous 1.2
Add PNG format trees to fid_checked.cgi.  Add support elsewhere.  Some
code clean-up.  Some increases in flexibility.

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Apr 9 21:00:24 2007 UTC (12 years, 8 months ago) by golsen
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, rast_2008_0924, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_release_2008_09_29
Changes since 1.1: +132 -3 lines
Diff to previous 1.1
Major change in the alignment and tree portions of fid_checked.
Nicer alignment display.
Clean-up of tree display and underlying libraries.
Caching of the alignment and tree so that display paramters and/or
assignments can be updated without recomputing the alignment and tree.

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Feb 21 18:15:51 2007 UTC (12 years, 9 months ago) by golsen
Branch: MAIN
A package for displaying alignments in html.  Includes functions for
colorering by residue, coloring by consensus, appending unaligned
residues to a trimmed alignment, and more.

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