[Bio] / FigKernelPackages / ffxtree.pm Repository:
ViewVC logotype

Log of /FigKernelPackages/ffxtree.pm

Parent Directory Parent Directory


Links to HEAD: (view) (download) (as text) (annotate)
Links to mgrast_release_3_0_4: (view) (download) (as text) (annotate)
Sticky Tag:

Revision 1.24 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Apr 13 06:19:00 2011 UTC (8 years, 9 months ago) by fangfang
Branch: MAIN
CVS Tags: mgrast_dev_04132011, mgrast_dev_05262011, mgrast_release_3_0_4
Changes since 1.23: +14 -2 lines
Diff to previous 1.23
fixed a format issue with description field in tree_to_html

Revision 1.23 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Mar 21 05:56:19 2011 UTC (8 years, 10 months ago) by fangfang
Branch: MAIN
CVS Tags: mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_release_3_0_3, myrast_33
Changes since 1.22: +8 -6 lines
Diff to previous 1.22
replace newick_subtree with rooted_newick_subtree

Revision 1.22 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Mar 18 16:27:57 2011 UTC (8 years, 10 months ago) by fangfang
Branch: MAIN
Changes since 1.21: +5 -5 lines
Diff to previous 1.21
parallel bootstrap support for phyml and raxml

Revision 1.21 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Mar 18 16:17:56 2011 UTC (8 years, 10 months ago) by fangfang
Branch: MAIN
Changes since 1.20: +4 -4 lines
Diff to previous 1.20
differentiating temp file names for parallel support

Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Mar 9 17:34:50 2011 UTC (8 years, 10 months ago) by fangfang
Branch: MAIN
CVS Tags: mgrast_release_3_0_1, mgrast_release_3_0_2
Changes since 1.19: +11 -17 lines
Diff to previous 1.19
improved performance for distances_from_tip, 0.15s for trees with 4000 tips

Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Mar 7 16:24:44 2011 UTC (8 years, 10 months ago) by fangfang
Branch: MAIN
CVS Tags: mgrast_release_3_0
Changes since 1.18: +117 -3 lines
Diff to previous 1.18
add more options for cohension groups
add distances_from_tip

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Feb 25 14:30:54 2011 UTC (8 years, 11 months ago) by fangfang
Branch: MAIN
Changes since 1.17: +6 -1 lines
Diff to previous 1.17
add more options for fasttree

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Feb 25 03:17:18 2011 UTC (8 years, 11 months ago) by fangfang
Branch: MAIN
Changes since 1.16: +3 -3 lines
Diff to previous 1.16
fix bug in peg link

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Feb 25 02:44:33 2011 UTC (8 years, 11 months ago) by fangfang
Branch: MAIN
Changes since 1.15: +4 -3 lines
Diff to previous 1.15
add peg link for pubseed

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Feb 6 07:53:15 2011 UTC (8 years, 11 months ago) by fangfang
Branch: MAIN
CVS Tags: mgrast_dev_02212011, mgrast_dev_02222011
Changes since 1.14: +5 -2 lines
Diff to previous 1.14
update tree_to_html

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Feb 1 03:56:44 2011 UTC (8 years, 11 months ago) by fangfang
Branch: MAIN
Changes since 1.13: +195 -25 lines
Diff to previous 1.13
add option for inserting linked text for tree tips

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Dec 29 21:50:04 2010 UTC (9 years ago) by fangfang
Branch: MAIN
CVS Tags: rast_rel_2011_0119
Changes since 1.12: +3 -0 lines
Diff to previous 1.12
update

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 27 00:05:36 2010 UTC (9 years, 1 month ago) by fangfang
Branch: MAIN
Changes since 1.11: +2 -2 lines
Diff to previous 1.11
switch to fasta format for fasttree

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 13 22:04:54 2010 UTC (9 years, 1 month ago) by fangfang
Branch: MAIN
Changes since 1.10: +15 -9 lines
Diff to previous 1.10
bug fix for dna alignment

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Dec 1 22:46:06 2010 UTC (9 years, 1 month ago) by fangfang
Branch: MAIN
CVS Tags: rast_rel_2010_1206
Changes since 1.9: +17 -2 lines
Diff to previous 1.9
update sas component

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Dec 1 22:45:39 2010 UTC (9 years, 1 month ago) by fangfang
Branch: MAIN
Changes since 1.8: +1 -2 lines
Diff to previous 1.8
removed dependency on gd_tree

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Nov 27 22:25:07 2010 UTC (9 years, 2 months ago) by fangfang
Branch: MAIN
Changes since 1.7: +68 -0 lines
Diff to previous 1.7
add make_cohesion_groups

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Nov 27 21:00:21 2010 UTC (9 years, 2 months ago) by fangfang
Branch: MAIN
Changes since 1.6: +1 -1 lines
Diff to previous 1.6
bug fix

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Nov 27 20:48:09 2010 UTC (9 years, 2 months ago) by fangfang
Branch: MAIN
Changes since 1.5: +20 -2 lines
Diff to previous 1.5
update option for showing branch support values

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Nov 27 05:06:35 2010 UTC (9 years, 2 months ago) by fangfang
Branch: MAIN
Changes since 1.4: +1 -1 lines
Diff to previous 1.4
highlight set of tips specified in $opts->{bold_set}

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Nov 27 01:10:30 2010 UTC (9 years, 2 months ago) by fangfang
Branch: MAIN
Changes since 1.3: +4 -1 lines
Diff to previous 1.3
update comment

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Nov 27 01:06:46 2010 UTC (9 years, 2 months ago) by fangfang
Branch: MAIN
Changes since 1.2: +2 -2 lines
Diff to previous 1.2
bug fix in likelihood evaluation

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Nov 27 00:25:26 2010 UTC (9 years, 2 months ago) by fangfang
Branch: MAIN
Changes since 1.1: +1259 -349 lines
Diff to previous 1.1
add tree_to_html

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 17 19:48:01 2010 UTC (9 years, 2 months ago) by fangfang
Branch: MAIN
tree support

This form allows you to request diffs between any two revisions of this file. For each of the two "sides" of the diff, select a symbolic revision name using the selection box, or choose 'Use Text Field' and enter a numeric revision.

  Diffs between and
  Type of Diff should be a

Sort log by:

MCS Webmaster
ViewVC Help
Powered by ViewVC 1.0.3