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Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Aug 15 23:32:19 2010 UTC (9 years, 3 months ago) by golsen
Branch: MAIN
CVS Tags: HEAD, mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912
Changes since 1.5: +77 -87 lines
Diff to previous 1.5
Update to use SeedAware.pm (and do some general clean-up).

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jun 10 20:23:37 2007 UTC (12 years, 5 months ago) by overbeek
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, rast_2008_0924, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_release_2008_09_29
Changes since 1.4: +2 -2 lines
Diff to previous 1.4
pack core alignments in make_trimmed_alignment_from_ids

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Fri May 11 18:51:28 2007 UTC (12 years, 6 months ago) by golsen
Branch: MAIN
Changes since 1.3: +133 -36 lines
Diff to previous 1.3
Encapsulate all of the SEED-dependent functions in the perl module.
It should still run all SEED-independent functions in any environment.

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Apr 28 22:35:02 2007 UTC (12 years, 6 months ago) by golsen
Branch: MAIN
Changes since 1.2: +3 -2 lines
Diff to previous 1.2
Improvements of functionality of finding related sequences in SEED.

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Apr 27 22:03:05 2007 UTC (12 years, 6 months ago) by golsen
Branch: MAIN
Changes since 1.1: +5 -4 lines
Diff to previous 1.1
Return either array or reference to array.

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Apr 27 21:57:48 2007 UTC (12 years, 6 months ago) by golsen
Branch: MAIN
The first draft of a function to search a database for sequences related
to a user-supplied exemplar, and return the matching sequences, trimmed
to the region of matching.

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