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Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Mar 14 16:52:48 2008 UTC (11 years, 11 months ago) by paczian
Branch: MAIN
CVS Tags: HEAD, mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_2008_0924, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912, rast_release_2008_09_29
Changes since 1.19: +1 -0 lines
Diff to previous 1.19 , to selected 1.7
added missing "use HTML;"

Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Dec 6 13:59:34 2007 UTC (12 years, 2 months ago) by parrello
Branch: MAIN
Changes since 1.18: +29 -29 lines
Diff to previous 1.18 , to selected 1.7
Changed POD format for better compatability with Wiki.

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 29 15:19:19 2006 UTC (13 years, 2 months ago) by olson
Branch: MAIN
Changes since 1.17: +7 -1 lines
Diff to previous 1.17 , to selected 1.7
Rollup commit of 48hr changes.

Added add_virtual_genome to Subsystem.pm to support UnvSubsys doing
the right thing when handed a FIGV.

Added propagation of 48hr_job thru the various link generation scripts in order for protein.cgi/display_subsys.cgi
to properly show virtual genomes.

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Nov 3 15:53:51 2006 UTC (13 years, 3 months ago) by paarmann
Branch: MAIN
Changes since 1.16: +31 -1 lines
Diff to previous 1.16 , to selected 1.7
added get_ssa_pretty()

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jan 31 04:09:13 2006 UTC (14 years ago) by overbeek
Branch: MAIN
CVS Tags: caBIG-05Apr06-00, caBIG-13Feb06-00
Changes since 1.15: +1 -0 lines
Diff to previous 1.15 , to selected 1.7
fix of clustering

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 5 19:06:30 2005 UTC (14 years, 2 months ago) by olson
Branch: MAIN
Changes since 1.14: +17 -0 lines
Diff to previous 1.14 , to selected 1.7
Added license words.

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Nov 28 22:41:16 2005 UTC (14 years, 2 months ago) by parrello
Branch: MAIN
Changes since 1.13: +45 -1 lines
Diff to previous 1.13 , to selected 1.7
Added functions to handle subsystem diagrams.

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 12 21:54:12 2005 UTC (14 years, 4 months ago) by olson
Branch: MAIN
CVS Tags: caBIG-00-00-00
Changes since 1.12: +2 -3 lines
Diff to previous 1.12 , to selected 1.7
add missing argument to active_genomes

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 12 02:47:56 2005 UTC (14 years, 4 months ago) by parrello
Branch: MAIN
Changes since 1.11: +787 -189 lines
Diff to previous 1.11 , to selected 1.7
Upgraded documentation.
Converted to use Sprout as well as SEED.

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 28 17:21:54 2005 UTC (14 years, 4 months ago) by overbeek
Branch: MAIN
CVS Tags: caBIG-dataload-0
Changes since 1.10: +10 -6 lines
Diff to previous 1.10 , to selected 1.7
minor fix to display_subsys.cgi

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Sep 27 00:58:27 2005 UTC (14 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.9: +3 -17 lines
Diff to previous 1.9 , to selected 1.7
fixes to HOPSS

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 21 16:32:42 2005 UTC (14 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.8: +13 -1 lines
Diff to previous 1.8 , to selected 1.7
fix bad bug in display_subsys

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Sep 20 16:58:48 2005 UTC (14 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.7: +21 -2 lines
Diff to previous 1.7
add ability to invoke display_subsys.cgi with colored pegs

Revision 1.7 - (view) (download) (as text) (annotate) - [selected]
Sun Sep 18 14:11:22 2005 UTC (14 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.6: +62 -8 lines
Diff to previous 1.6
fixes on showing subsystems

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Sep 18 01:20:28 2005 UTC (14 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.5: +58 -4 lines
Diff to previous 1.5 , to selected 1.7
fixes to display_subsys.cgi

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Sep 15 14:33:49 2005 UTC (14 years, 5 months ago) by parrello
Branch: MAIN
Changes since 1.4: +156 -156 lines
Diff to previous 1.4 , to selected 1.7
Converted tabs to spaces.

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Sep 12 20:45:51 2005 UTC (14 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.3: +173 -3 lines
Diff to previous 1.3 , to selected 1.7
first real version of display_subsys.cgi

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Sep 12 14:53:13 2005 UTC (14 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.2: +43 -1 lines
Diff to previous 1.2 , to selected 1.7
display_subsys.cgi that works

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Sep 12 02:39:37 2005 UTC (14 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.1: +94 -5 lines
Diff to previous 1.1 , to selected 1.7
commit incomplete, bug ridden display_subsys.cgi

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Sep 11 23:44:46 2005 UTC (14 years, 5 months ago) by overbeek
Branch: MAIN
Diff to selected 1.7
add UnvSubsys.pm

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