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Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 7 22:23:07 2009 UTC (10 years, 5 months ago) by gdpusch
Branch: MAIN
CVS Tags: mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, myrast_33, myrast_rel40, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119
Changes since 1.10: +170 -43 lines
Diff to previous 1.10
Major rewrite to prevent already-found PEGs from being re-called by every stage of RAST.

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jan 25 04:05:38 2008 UTC (11 years, 10 months ago) by gdpusch
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, rast_2008_0924, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_release_2008_09_29
Changes since 1.9: +4 -3 lines
Diff to previous 1.9
Clarified error msg for missing PEG FASTA file. -- /gdp

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Nov 18 15:09:30 2007 UTC (12 years, 1 month ago) by overbeek
Branch: MAIN
Changes since 1.8: +1 -1 lines
Diff to previous 1.8
fixes to find_poss_subsys_instances.cgi

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Sep 14 18:10:21 2007 UTC (12 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.7: +35 -3 lines
Diff to previous 1.7
fixes to ToCal.pm

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Thu May 24 21:05:37 2007 UTC (12 years, 6 months ago) by olson
Branch: MAIN
Changes since 1.6: +2 -2 lines
Diff to previous 1.6
use FIGV

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Apr 27 19:14:35 2007 UTC (12 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.5: +1 -3 lines
Diff to previous 1.5
fixes to rapid propagation

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Sep 1 16:10:24 2006 UTC (13 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.4: +3 -1 lines
Diff to previous 1.4
Fixed backwards test for formatdb invocation. -- /gdp

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Sep 1 14:58:47 2006 UTC (13 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.3: +8 -3 lines
Diff to previous 1.3
Added check for non-null query-seqs in &candidate_orfs(). -- /gdp

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jun 16 13:20:22 2006 UTC (13 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.2: +6 -0 lines
Diff to previous 1.2
just add comments to ToCall.pm

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Tue May 30 02:50:58 2006 UTC (13 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.1: +29 -0 lines
Diff to previous 1.1
fixs to rapid propagation

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Mon May 29 18:07:44 2006 UTC (13 years, 6 months ago) by overbeek
Branch: MAIN
set up find_neighbors to handle existing genomes

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