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Revision 1.157 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Apr 26 17:22:00 2019 UTC (11 months ago) by olson
Branch: MAIN
CVS Tags: HEAD
Changes since 1.156: +16 -10 lines
Diff to previous 1.156
Fix perf bug where we query database many times just to find version info.
This gets progressively more expensive as data is added to the table since
indexes are off.

Revision 1.156 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 18 15:14:50 2017 UTC (2 years, 8 months ago) by olson
Branch: MAIN
Changes since 1.155: +2 -0 lines
Diff to previous 1.155
Remove carriage returns when saving notes file

Revision 1.155 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Feb 27 17:39:44 2017 UTC (3 years, 1 month ago) by overbeek
Branch: MAIN
Changes since 1.154: +1 -1 lines
Diff to previous 1.154
fix tree_utilities parser

Revision 1.154 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 15 20:19:18 2011 UTC (8 years, 9 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_rel40, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912
Changes since 1.153: +1 -0 lines
Diff to previous 1.153
forgot the delete on subsystem_nonaux_role

Revision 1.153 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 15 20:05:24 2011 UTC (8 years, 9 months ago) by olson
Branch: MAIN
Changes since 1.152: +1 -1 lines
Diff to previous 1.152
Fix indexing upon subsystem installation

Revision 1.152 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 14 21:56:22 2011 UTC (8 years, 9 months ago) by olson
Branch: MAIN
Changes since 1.151: +10 -2 lines
Diff to previous 1.151
add nonaux role index

Revision 1.151 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 14 21:18:32 2011 UTC (8 years, 9 months ago) by olson
Branch: MAIN
Changes since 1.150: +24 -0 lines
Diff to previous 1.150
Mods for new subsystem indexes

Revision 1.150 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 14 19:00:15 2011 UTC (8 years, 9 months ago) by olson
Branch: MAIN
Changes since 1.149: +3 -2 lines
Diff to previous 1.149
FIG.pm subsystem cache update fixes

Revision 1.149 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jan 31 15:44:47 2011 UTC (9 years, 2 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, myrast_33
Changes since 1.148: +1 -0 lines
Diff to previous 1.148
Subsystem speedup fixes.

Revision 1.148 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jan 21 20:34:01 2011 UTC (9 years, 2 months ago) by redwards
Branch: MAIN
Changes since 1.147: +54 -0 lines
Diff to previous 1.147
adding settors for abbr_for_role and curator, fixing some definitions

Revision 1.147 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Mar 22 21:18:41 2010 UTC (10 years ago) by overbeek
Branch: MAIN
CVS Tags: rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119
Changes since 1.146: +1 -1 lines
Diff to previous 1.146
minor fix

Revision 1.146 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Mar 11 16:51:52 2010 UTC (10 years ago) by paczian
Branch: MAIN
Changes since 1.145: +1 -1 lines
Diff to previous 1.145
added check for undef of cell in get_roles_for_genome

Revision 1.145 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jul 15 21:22:38 2009 UTC (10 years, 8 months ago) by redwards
Branch: MAIN
CVS Tags: rast_rel_2009_0925, rast_rel_2010_0118
Changes since 1.144: +2 -2 lines
Diff to previous 1.144
moving error messages from STDOUT to STDERR

Revision 1.144 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jan 19 20:45:38 2009 UTC (11 years, 2 months ago) by parrello
Branch: MAIN
CVS Tags: rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_rel_2009_07_09
Changes since 1.143: +14 -0 lines
Diff to previous 1.143
Added a new method-- all_functions-- that allows SproutSubsys to retrieve role information more efficiently.

Revision 1.143 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Dec 11 18:22:59 2008 UTC (11 years, 3 months ago) by dejongh
Branch: MAIN
CVS Tags: rast_rel_2008_12_18
Changes since 1.142: +0 -18 lines
Diff to previous 1.142
removed copy_hope_info

Revision 1.142 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Nov 13 21:53:42 2008 UTC (11 years, 4 months ago) by dejongh
Branch: MAIN
CVS Tags: rast_rel_2008_11_24
Changes since 1.141: +0 -50 lines
Diff to previous 1.141
Move get_hope_reactions_for_genome to model.pm

Revision 1.141 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Nov 11 13:41:27 2008 UTC (11 years, 4 months ago) by paczian
Branch: MAIN
Changes since 1.140: +6 -2 lines
Diff to previous 1.140
updated for use with FIGM

Revision 1.140 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Nov 3 18:18:59 2008 UTC (11 years, 5 months ago) by dejongh
Branch: MAIN
CVS Tags: mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2
Changes since 1.139: +32 -13 lines
Diff to previous 1.139
Changes to get_hope_reactions for a genome even if it isn't active in a subsystem, by looking at which Functional Roles are present in its annotation

Revision 1.139 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 15 11:52:55 2008 UTC (11 years, 5 months ago) by parrello
Branch: MAIN
CVS Tags: rast_rel_2008_10_29
Changes since 1.138: +2 -4 lines
Diff to previous 1.138
Fixed a bad URL.

Revision 1.138 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Oct 13 20:26:02 2008 UTC (11 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.137: +40 -0 lines
Diff to previous 1.137
Add support for subsystem_metadata table. Updates via Subsystem::db_sync.

Revision 1.137 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Sep 25 15:36:03 2008 UTC (11 years, 6 months ago) by bartels
Branch: MAIN
CVS Tags: rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_release_2008_09_29
Changes since 1.136: +41 -0 lines
Diff to previous 1.136
inserted code to save rules and definitions for check variants

Revision 1.136 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Sep 6 20:34:52 2008 UTC (11 years, 6 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, rast_2008_0924
Changes since 1.135: +65 -0 lines
Diff to previous 1.135
Add support for $fig->change_funcrole()

Revision 1.135 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jul 28 15:28:05 2008 UTC (11 years, 8 months ago) by bartels
Branch: MAIN
CVS Tags: mgrast_rel_2008_0806, rast_rel_2008_08_07
Changes since 1.134: +3 -2 lines
Diff to previous 1.134
*** empty log message ***

Revision 1.134 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 15 17:23:38 2008 UTC (11 years, 8 months ago) by bartels
Branch: MAIN
Changes since 1.133: +2 -3 lines
Diff to previous 1.133
*** empty log message ***

Revision 1.133 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 10 22:11:47 2008 UTC (11 years, 9 months ago) by overbeek
Branch: MAIN
CVS Tags: rast_rel_2008_07_21
Changes since 1.132: +4 -2 lines
Diff to previous 1.132
minor fixes due to changes to what a genome is

Revision 1.132 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 10 18:46:38 2008 UTC (11 years, 9 months ago) by overbeek
Branch: MAIN
Changes since 1.131: +61 -2 lines
Diff to previous 1.131
Generalize rows of subsystems to be Genome:Loc

Revision 1.131 - (view) (download) (as text) (annotate) - [select for diffs]
Sat May 17 13:53:58 2008 UTC (11 years, 10 months ago) by overbeek
Branch: MAIN
CVS Tags: rast_rel_2008_06_16, rast_rel_2008_06_18
Changes since 1.130: +3 -2 lines
Diff to previous 1.130
minor fix to Subsystems.pm

Revision 1.130 - (view) (download) (as text) (annotate) - [select for diffs]
Fri May 16 15:23:18 2008 UTC (11 years, 10 months ago) by bartels
Branch: MAIN
Changes since 1.129: +10 -4 lines
Diff to previous 1.129
fixed a bug that broke the hundred by a hundred attributes in the old
interface

Revision 1.129 - (view) (download) (as text) (annotate) - [select for diffs]
Thu May 1 21:40:53 2008 UTC (11 years, 11 months ago) by bartels
Branch: MAIN
Changes since 1.128: +1 -1 lines
Diff to previous 1.128
*** empty log message ***

Revision 1.128 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Apr 30 16:01:28 2008 UTC (11 years, 11 months ago) by bartels
Branch: MAIN
Changes since 1.127: +10 -10 lines
Diff to previous 1.127
now fixed it correctly...

Revision 1.127 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Apr 30 15:35:57 2008 UTC (11 years, 11 months ago) by bartels
Branch: MAIN
Changes since 1.126: +9 -9 lines
Diff to previous 1.126
fixed something...

Revision 1.126 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Apr 28 16:32:27 2008 UTC (11 years, 11 months ago) by bartels
Branch: MAIN
Changes since 1.125: +63 -1 lines
Diff to previous 1.125
added stuff for empty cells

Revision 1.125 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Mar 28 16:38:25 2008 UTC (12 years ago) by bartels
Branch: MAIN
CVS Tags: rast_rel_2008_04_23
Changes since 1.124: +114 -0 lines
Diff to previous 1.124
added a function for changing just the string of a functional role

Revision 1.124 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Mar 20 19:28:37 2008 UTC (12 years ago) by bartels
Branch: MAIN
Changes since 1.123: +40 -6 lines
Diff to previous 1.123
added support for variant descriptions

Revision 1.123 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Mar 19 22:54:44 2008 UTC (12 years ago) by overbeek
Branch: MAIN
Changes since 1.122: +1 -1 lines
Diff to previous 1.122
get rid of debugging Dumper in Subsystem.pm

Revision 1.122 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Feb 19 18:36:34 2008 UTC (12 years, 1 month ago) by olson
Branch: MAIN
Changes since 1.121: +16 -0 lines
Diff to previous 1.121
validate genome id is of the proper form  before writing its row to spreadsheet.

Revision 1.121 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Feb 11 19:13:06 2008 UTC (12 years, 1 month ago) by bartels
Branch: MAIN
Changes since 1.120: +7 -2 lines
Diff to previous 1.120
*** empty log message ***

Revision 1.120 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Dec 9 21:08:22 2007 UTC (12 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.119: +1 -1 lines
Diff to previous 1.119
Fixed bad spelling in a call to FIGRules.

Revision 1.119 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Dec 6 13:59:34 2007 UTC (12 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.118: +76 -103 lines
Diff to previous 1.118
Changed POD format for better compatability with Wiki.

Revision 1.118 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Nov 2 19:12:58 2007 UTC (12 years, 5 months ago) by dejongh
Branch: MAIN
Changes since 1.117: +13 -11 lines
Diff to previous 1.117
Hope College updates

Revision 1.117 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Oct 9 21:16:35 2007 UTC (12 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.116: +19 -0 lines
Diff to previous 1.116
Add subsystem-at-a-time coupling lookup in get_ev_codes that goes iwth the new coupled_to_batch interface.

Revision 1.116 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Sep 30 23:32:33 2007 UTC (12 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.115: +2 -0 lines
Diff to previous 1.115
fixes to Subsystem.pm

Revision 1.115 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Sep 30 23:08:43 2007 UTC (12 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.114: +21 -2 lines
Diff to previous 1.114
minor modifications to get subsystems statistics

Revision 1.114 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Sep 21 14:16:06 2007 UTC (12 years, 6 months ago) by olson
Branch: MAIN
Changes since 1.113: +7 -4 lines
Diff to previous 1.113
Make coupling coloring work when the pch server is in use.

Revision 1.113 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Sep 18 16:48:07 2007 UTC (12 years, 6 months ago) by olson
Branch: MAIN
Changes since 1.112: +1 -0 lines
Diff to previous 1.112
added missing "use"

Revision 1.112 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 8 21:55:29 2007 UTC (12 years, 7 months ago) by olson
Branch: MAIN
Changes since 1.111: +12 -2 lines
Diff to previous 1.111
Fix diagram update bug on isntall of existing subystem.

Revision 1.111 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 24 17:31:16 2007 UTC (12 years, 8 months ago) by parrello
Branch: MAIN
Changes since 1.110: +2 -1 lines
Diff to previous 1.110
Commented out a debug print.

Revision 1.110 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jul 18 18:08:43 2007 UTC (12 years, 8 months ago) by olson
Branch: MAIN
Changes since 1.109: +122 -2 lines
Diff to previous 1.109
add support for description and literature in the notes section.

Revision 1.109 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 14 19:46:50 2007 UTC (12 years, 9 months ago) by olson
Branch: MAIN
Changes since 1.108: +3 -3 lines
Diff to previous 1.108
change GetFile back to file_read - it is not an error for the files not to exist.

Revision 1.108 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jun 11 17:37:59 2007 UTC (12 years, 9 months ago) by parrello
Branch: MAIN
Changes since 1.107: +35 -28 lines
Diff to previous 1.107
Factored out some FIG references to make it easier to move the code to Sprout. Fixed a messy problem in the handling of diagrams when the user is coming from "display_subsys.cgi" instead of the other thing whose name I can't remember right now.

Revision 1.107 - (view) (download) (as text) (annotate) - [select for diffs]
Tue May 22 18:16:37 2007 UTC (12 years, 10 months ago) by dejongh
Branch: MAIN
Changes since 1.106: +10 -5 lines
Diff to previous 1.106
get_hope_reactions_for_genome now returns a hash of reactions to pegs

Revision 1.106 - (view) (download) (as text) (annotate) - [select for diffs]
Fri May 18 16:57:19 2007 UTC (12 years, 10 months ago) by dejongh
Branch: MAIN
Changes since 1.105: +26 -0 lines
Diff to previous 1.105
Added get_hope_reactions_for_genome

Revision 1.105 - (view) (download) (as text) (annotate) - [select for diffs]
Tue May 15 21:12:18 2007 UTC (12 years, 10 months ago) by olson
Branch: MAIN
Changes since 1.104: +476 -1 lines
Diff to previous 1.104
Hope college modifications.

Revision 1.104 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Apr 10 03:50:30 2007 UTC (12 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.103: +21 -2 lines
Diff to previous 1.103
Added some POD documentation.

Revision 1.103 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Apr 5 21:31:06 2007 UTC (13 years ago) by olson
Branch: MAIN
Changes since 1.102: +1 -1 lines
Diff to previous 1.102
do bulk lookup of attributes correctly

Revision 1.102 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Apr 5 21:03:50 2007 UTC (13 years ago) by olson
Branch: MAIN
Changes since 1.101: +11 -2 lines
Diff to previous 1.101
do bulk lookup of attributes

Revision 1.101 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Apr 4 21:31:55 2007 UTC (13 years ago) by olson
Branch: MAIN
Changes since 1.100: +3 -3 lines
Diff to previous 1.100
add comma and colon to banned characters

Revision 1.100 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Apr 4 21:22:52 2007 UTC (13 years ago) by olson
Branch: MAIN
Changes since 1.99: +22 -0 lines
Diff to previous 1.99
make role abbreviations space-free and unique on write to spreadsheet

Revision 1.99 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Mar 12 13:39:05 2007 UTC (13 years ago) by overbeek
Branch: MAIN
Changes since 1.98: +6 -3 lines
Diff to previous 1.98
fixes to allow non-peg features in subsystems

Revision 1.98 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Feb 16 22:28:01 2007 UTC (13 years, 1 month ago) by paarmann
Branch: MAIN
Changes since 1.97: +2 -0 lines
Diff to previous 1.97
create_new_diagram now returns the id of the created diagram

Revision 1.97 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Feb 16 16:46:22 2007 UTC (13 years, 1 month ago) by paarmann
Branch: MAIN
Changes since 1.96: +25 -0 lines
Diff to previous 1.96
added support for new diagrams

Revision 1.96 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jan 26 21:33:03 2007 UTC (13 years, 2 months ago) by olson
Branch: MAIN
Changes since 1.95: +51 -0 lines
Diff to previous 1.95
add get_roles_for_genome and get_abbr_for_role

Revision 1.95 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jan 19 17:01:06 2007 UTC (13 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.94: +1 -0 lines
Diff to previous 1.94
make sure things work, even if the table aux_roles does not exist

Revision 1.94 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jan 18 03:08:57 2007 UTC (13 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.93: +34 -3 lines
Diff to previous 1.93
add comments to functions

Revision 1.93 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Dec 13 19:11:05 2006 UTC (13 years, 3 months ago) by olson
Branch: MAIN
Changes since 1.92: +2 -2 lines
Diff to previous 1.92
remove debug prints

Revision 1.92 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 29 15:19:19 2006 UTC (13 years, 4 months ago) by olson
Branch: MAIN
Changes since 1.91: +29 -0 lines
Diff to previous 1.91
Rollup commit of 48hr changes.

Added add_virtual_genome to Subsystem.pm to support UnvSubsys doing
the right thing when handed a FIGV.

Added propagation of 48hr_job thru the various link generation scripts in order for protein.cgi/display_subsys.cgi
to properly show virtual genomes.

Revision 1.91 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Oct 22 05:07:46 2006 UTC (13 years, 5 months ago) by parrello
Branch: MAIN
Changes since 1.90: +38 -0 lines
Diff to previous 1.90
Added a method to get the roles of a peg in the subsystem.

Revision 1.90 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Oct 17 18:44:03 2006 UTC (13 years, 5 months ago) by parrello
Branch: MAIN
Changes since 1.89: +9 -1 lines
Diff to previous 1.89
Updated diagram URL computer to specify SPROUT=1 if called from Sprout pages.

Revision 1.89 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Aug 26 21:10:13 2006 UTC (13 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.88: +0 -1 lines
Diff to previous 1.88
add add_to_subsystems

Revision 1.88 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 1 21:06:19 2006 UTC (13 years, 10 months ago) by overbeek
Branch: MAIN
Changes since 1.87: +1 -1 lines
Diff to previous 1.87
RAE: removing extra new line

Revision 1.87 - (view) (download) (as text) (annotate) - [select for diffs]
Fri May 12 12:05:55 2006 UTC (13 years, 10 months ago) by heiko
Branch: MAIN
Changes since 1.86: +24 -4 lines
Diff to previous 1.86
added a strict param to the function functional_role_instances that only selects pegs that are still in sync with the role

Revision 1.86 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Apr 2 16:57:10 2006 UTC (14 years ago) by parrello
Branch: MAIN
Changes since 1.85: +1 -1 lines
Diff to previous 1.85
Changed a warning to a trace message.

Revision 1.85 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Mar 23 22:27:14 2006 UTC (14 years ago) by overbeek
Branch: MAIN
Changes since 1.84: +2 -2 lines
Diff to previous 1.84
RAE: Debugging a weird ss error on yersinia that I cant replicate elsewhere

Revision 1.84 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Mar 21 17:06:47 2006 UTC (14 years ago) by olson
Branch: MAIN
Changes since 1.83: +11 -2 lines
Diff to previous 1.83
more empty-SS fixes

Revision 1.83 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Mar 21 16:59:12 2006 UTC (14 years ago) by olson
Branch: MAIN
Changes since 1.82: +2 -2 lines
Diff to previous 1.82
Some null-ref checks.

Revision 1.82 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jan 31 04:11:08 2006 UTC (14 years, 2 months ago) by overbeek
Branch: MAIN
CVS Tags: caBIG-05Apr06-00, caBIG-13Feb06-00
Changes since 1.81: +1 -2 lines
Diff to previous 1.81
fix of clustering

Revision 1.81 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jan 31 04:09:13 2006 UTC (14 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.80: +2 -1 lines
Diff to previous 1.80
fix of clustering

Revision 1.80 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jan 30 19:36:04 2006 UTC (14 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.79: +1 -1 lines
Diff to previous 1.79
use is_genome checks for subsystems?

Revision 1.79 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jan 5 02:30:25 2006 UTC (14 years, 2 months ago) by olson
Branch: MAIN
Changes since 1.78: +2 -2 lines
Diff to previous 1.78
remove variant debug messages.

Revision 1.78 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Dec 30 11:52:01 2005 UTC (14 years, 3 months ago) by heiko
Branch: MAIN
Changes since 1.77: +36 -0 lines
Diff to previous 1.77
added functional_role_instances function

Revision 1.77 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Dec 8 19:50:50 2005 UTC (14 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.76: +20 -9 lines
Diff to previous 1.76
Added trace messages.

Revision 1.76 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 5 19:06:30 2005 UTC (14 years, 3 months ago) by olson
Branch: MAIN
Changes since 1.75: +17 -0 lines
Diff to previous 1.75
Added license words.

Revision 1.75 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Nov 28 22:39:45 2005 UTC (14 years, 4 months ago) by parrello
Branch: MAIN
Changes since 1.74: +218 -31 lines
Diff to previous 1.74
Split "get_diagrams" into subroutines so that tasks performed by both the FIG and Sprout functions use common code.

Revision 1.74 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 12 21:03:16 2005 UTC (14 years, 5 months ago) by overbeek
Branch: MAIN
CVS Tags: caBIG-00-00-00
Changes since 1.73: +4 -2 lines
Diff to previous 1.73
Broad minor fixes to make the SEED use relative paths throughout.

(The motivation this is to fully enable hiding the actual location of a running SEED system behind a web proxy so that things like NMPDR protein page references can be made stable across multiple releases).

This involved things like the following:

Changing $cgi->url() to $cgi->url(-relative => 1)
Changing $cgi->self_url() to $cgi->url(-relative => 1, -query => 1, -path_info => 1)

Changing the definition of FIG::cgi_url() to return "." (this may break something, but I haven't found it yet).

Revision 1.73 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 12 02:45:35 2005 UTC (14 years, 5 months ago) by parrello
Branch: MAIN
Changes since 1.72: +271 -92 lines
Diff to previous 1.72
Upgraded the documentation.

Revision 1.72 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Oct 3 20:00:13 2005 UTC (14 years, 6 months ago) by redwards
Branch: MAIN
CVS Tags: caBIG-dataload-0
Changes since 1.71: +2 -0 lines
Diff to previous 1.71
removing leading/trailing spaces

Revision 1.71 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Sep 15 19:04:46 2005 UTC (14 years, 6 months ago) by olson
Branch: MAIN
Changes since 1.70: +1 -1 lines
Diff to previous 1.70
Remove debug print.

Revision 1.70 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Sep 15 18:47:58 2005 UTC (14 years, 6 months ago) by olson
Branch: MAIN
Changes since 1.69: +267 -61 lines
Diff to previous 1.69
Careful cleanup of subsystem indexing. Patched a bunch of spots where needed updates didn't happen.

Add variant code to subsystem index.

Revision 1.69 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Sep 15 14:33:49 2005 UTC (14 years, 6 months ago) by parrello
Branch: MAIN
Changes since 1.68: +696 -696 lines
Diff to previous 1.68
Converted tabs to spaces.

Revision 1.68 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 10 16:25:28 2005 UTC (14 years, 7 months ago) by olson
Branch: MAIN
Changes since 1.67: +5 -5 lines
Diff to previous 1.67
Add a force_backups option to write_subsystem.

Revision 1.67 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 10 12:03:36 2005 UTC (14 years, 7 months ago) by olson
Branch: MAIN
Changes since 1.66: +51 -7 lines
Diff to previous 1.66
More logging and sanity checks on diagram code.

Revision 1.66 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Aug 9 18:08:41 2005 UTC (14 years, 7 months ago) by olson
Branch: MAIN
Changes since 1.65: +22 -1 lines
Diff to previous 1.65
Use system and an array to do the rm -r so we don't get bashed by ()s.

Revision 1.65 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 8 21:54:39 2005 UTC (14 years, 7 months ago) by olson
Branch: MAIN
Changes since 1.64: +111 -26 lines
Diff to previous 1.64
More diagram changes.

Add new simple start page.

Revision 1.64 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 8 20:05:08 2005 UTC (14 years, 7 months ago) by parrello
Branch: MAIN
Changes since 1.63: +3 -3 lines
Diff to previous 1.63
Fixed module attributes that were causing massive compile warnings.

Revision 1.63 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 4 13:27:40 2005 UTC (14 years, 8 months ago) by overbeek
Branch: MAIN
Changes since 1.62: +1 -1 lines
Diff to previous 1.62
fix bad bug in db_synch for subsystems

Revision 1.62 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 3 21:16:29 2005 UTC (14 years, 8 months ago) by olson
Branch: MAIN
Changes since 1.61: +36 -5 lines
Diff to previous 1.61
Support gif/png/jpeg file type detection on diagram upload.
Support the multiple file types on packaging for clearinghouse.

Revision 1.61 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 3 17:40:42 2005 UTC (14 years, 8 months ago) by olson
Branch: MAIN
Changes since 1.60: +140 -18 lines
Diff to previous 1.60
Add support for creating and parsing diagram data as part of subsystem clearinghouse packages.

Revision 1.60 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 1 22:22:13 2005 UTC (14 years, 8 months ago) by parrello
Branch: MAIN
Changes since 1.59: +81 -81 lines
Diff to previous 1.59
Changed attributes to capital-case in order to prevent the avalanche of compile-time warnings.

Revision 1.59 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Jul 30 13:02:31 2005 UTC (14 years, 8 months ago) by overbeek
Branch: MAIN
Changes since 1.58: +10 -3 lines
Diff to previous 1.58
fixes to reactions in subsystems

Revision 1.58 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jul 29 19:31:21 2005 UTC (14 years, 8 months ago) by overbeek
Branch: MAIN
Changes since 1.57: +54 -1 lines
Diff to previous 1.57
add reactions to subsystems

Revision 1.57 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jul 29 18:13:45 2005 UTC (14 years, 8 months ago) by olson
Branch: MAIN
Changes since 1.56: +9 -2 lines
Diff to previous 1.56
Make index_subsystems use file load instead of inserts.

Revision 1.56 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jul 21 18:38:58 2005 UTC (14 years, 8 months ago) by olson
Branch: MAIN
Changes since 1.55: +3 -0 lines
Diff to previous 1.55
Convert space to _ in constructor.

Revision 1.55 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 12 21:08:09 2005 UTC (14 years, 8 months ago) by redwards
Branch: MAIN
Changes since 1.54: +6 -2 lines
Diff to previous 1.54
improved subsys_vectors.cgi

Revision 1.54 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 8 23:05:21 2005 UTC (14 years, 9 months ago) by overbeek
Branch: MAIN
CVS Tags: Root-bobdev_news, merge-bobdev_news-1, merge-bobdev_news-2, merge-bodev_news-3, merge-trunktag-bobdev_news-1, merge-trunktag-bobdev_news-2, merge-trunktag-bodev_news-3
Branch point for: Branch-bobdev_news
Changes since 1.53: +1 -0 lines
Diff to previous 1.53
major change to BBHs (use precomputed)

Revision 1.53 - (view) (download) (as text) (annotate) - [select for diffs]
Tue May 10 12:03:39 2005 UTC (14 years, 10 months ago) by overbeek
Branch: MAIN
Changes since 1.52: +3 -1 lines
Diff to previous 1.52
fixes to using trees under subsystems

Revision 1.52 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Apr 25 19:59:11 2005 UTC (14 years, 11 months ago) by olson
Branch: MAIN
Changes since 1.51: +48 -1 lines
Diff to previous 1.51
add get_sorted_rows.

Fix get_subsetC to not fail on empty subsets.

Revision 1.51 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Apr 8 20:22:23 2005 UTC (14 years, 11 months ago) by redwards
Branch: MAIN
Changes since 1.50: +1 -1 lines
Diff to previous 1.50
changed tag/value pairs completely. Ooops!

Revision 1.50 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Apr 7 19:16:10 2005 UTC (14 years, 11 months ago) by redwards
Branch: MAIN
Changes since 1.49: +8 -4 lines
Diff to previous 1.49
many changes to key/value pairs to make them work

Revision 1.49 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Apr 5 18:24:34 2005 UTC (15 years ago) by overbeek
Branch: MAIN
Changes since 1.48: +4 -0 lines
Diff to previous 1.48
strip leading/trailing spaces on subsystem aabr and names

Revision 1.48 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Mar 12 20:30:38 2005 UTC (15 years ago) by redwards
Branch: MAIN
Changes since 1.47: +24 -0 lines
Diff to previous 1.47
Changed Subsystems to allow selection of active_subsetR (rows) based on tag/value pairs

Revision 1.47 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Feb 26 11:01:13 2005 UTC (15 years, 1 month ago) by overbeek
Branch: MAIN
Changes since 1.46: +14 -6 lines
Diff to previous 1.46
add reset_curator.cgi

Revision 1.46 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Feb 24 22:02:39 2005 UTC (15 years, 1 month ago) by overbeek
Branch: MAIN
Changes since 1.45: +4 -2 lines
Diff to previous 1.45
add set_variants.cgi and fixes to Subsystems.pm

Revision 1.45 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Feb 14 18:22:14 2005 UTC (15 years, 1 month ago) by overbeek
Branch: MAIN
Changes since 1.44: +1 -0 lines
Diff to previous 1.44
initialize classification data when creating subsystem

Revision 1.44 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Feb 12 18:18:14 2005 UTC (15 years, 1 month ago) by redwards
Branch: MAIN
Changes since 1.43: +31 -0 lines
Diff to previous 1.43
Moved the subsystem_classification getting/setting into subsys.pm where it belongs, and so I ammended FIG.pm. Also added the boxes on the subsystem page so you can see the classifications.

Revision 1.43 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jan 26 23:46:20 2005 UTC (15 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.42: +9 -0 lines
Diff to previous 1.42
fix bug in removing genomes from a subsystem

Revision 1.42 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Nov 30 17:06:13 2004 UTC (15 years, 4 months ago) by olson
Branch: MAIN
Changes since 1.41: +36 -1 lines
Diff to previous 1.41
Add support for sending a list of genomes to billogix extension code.

Revision 1.41 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Nov 12 03:48:02 2004 UTC (15 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.40: +6 -0 lines
Diff to previous 1.40
fix bug in -save parm for align_with_clustal

Revision 1.40 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Oct 25 20:32:35 2004 UTC (15 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.39: +4 -2 lines
Diff to previous 1.39
add document on exchange of annotations and assignments

Revision 1.39 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Oct 16 20:42:28 2004 UTC (15 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.38: +5 -2 lines
Diff to previous 1.38
fixes to generalize chromosomal_clusters.cgi for UniProt

Revision 1.38 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Oct 12 11:56:23 2004 UTC (15 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.37: +7 -3 lines
Diff to previous 1.37
updates to subsys.cgi

Revision 1.37 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Oct 10 17:13:55 2004 UTC (15 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.36: +62 -17 lines
Diff to previous 1.36
many fixes to subsystems code

Revision 1.36 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 6 21:37:02 2004 UTC (15 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.35: +5 -2 lines
Diff to previous 1.35
fix bug in copying a subsystem

Revision 1.35 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Sep 28 20:39:39 2004 UTC (15 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.34: +18 -10 lines
Diff to previous 1.34
fix subset and sorting problems in subsys.cgi

Revision 1.34 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Sep 23 19:58:28 2004 UTC (15 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.33: +7 -0 lines
Diff to previous 1.33
subsys.cgi was not letting the user delete genomes or set variants

Revision 1.33 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Sep 17 00:56:04 2004 UTC (15 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.32: +8 -2 lines
Diff to previous 1.32
fixes to subsys.cgi

Revision 1.32 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Sep 9 00:00:09 2004 UTC (15 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.31: +1 -1 lines
Diff to previous 1.31
minor fixes

Revision 1.31 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Sep 7 02:54:16 2004 UTC (15 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.30: +71 -11 lines
Diff to previous 1.30
add new subsystem interface

Revision 1.30 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 1 18:39:23 2004 UTC (15 years, 7 months ago) by olson
Branch: MAIN
Changes since 1.29: +30 -0 lines
Diff to previous 1.29
Add set/get active subsets.

Revision 1.29 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Aug 29 18:36:05 2004 UTC (15 years, 7 months ago) by olson
Branch: MAIN
Changes since 1.28: +17 -2 lines
Diff to previous 1.28
add roles_with_abbrevations

Revision 1.28 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Aug 27 17:57:17 2004 UTC (15 years, 7 months ago) by olson
Branch: MAIN
Changes since 1.27: +1 -1 lines
Diff to previous 1.27
darn typos

Revision 1.27 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Aug 27 17:55:45 2004 UTC (15 years, 7 months ago) by olson
Branch: MAIN
Changes since 1.26: +1 -1 lines
Diff to previous 1.26
Fix typo.

Revision 1.26 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Aug 27 15:36:29 2004 UTC (15 years, 7 months ago) by olson
Branch: MAIN
Changes since 1.25: +110 -0 lines
Diff to previous 1.25
Added get/set_notes, set_pegs_in_cell, functionality for importing notes
from copied subsystem.

Revision 1.25 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 26 21:26:52 2004 UTC (15 years, 7 months ago) by olson
Branch: MAIN
Changes since 1.24: +974 -41 lines
Diff to previous 1.24
Massive changes to suppor new subsystem editor.

Revision 1.24 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 16 22:10:55 2004 UTC (15 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.23: +0 -2 lines
Diff to previous 1.23
straighten out FIG.pm

Revision 1.23 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Aug 3 19:13:25 2004 UTC (15 years, 8 months ago) by olson
Branch: MAIN
Changes since 1.22: +131 -54 lines
Diff to previous 1.22
Add chunked execution of subsystem extension.

Revision 1.22 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 20 18:20:14 2004 UTC (15 years, 8 months ago) by olson
Branch: MAIN
Changes since 1.21: +12 -0 lines
Diff to previous 1.21
changes to delete subsystem_index entries when a subsystem is deleted

Revision 1.21 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 24 19:28:23 2004 UTC (15 years, 9 months ago) by olson
Branch: MAIN
Changes since 1.20: +8 -8 lines
Diff to previous 1.20
scalar decls

Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 24 19:14:57 2004 UTC (15 years, 9 months ago) by olson
Branch: MAIN
Changes since 1.19: +7 -0 lines
Diff to previous 1.19
add call to get role from abbreviation

Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 24 18:41:39 2004 UTC (15 years, 9 months ago) by olson
Branch: MAIN
Changes since 1.18: +39 -1 lines
Diff to previous 1.18
Check for existence of rows file after prolog run finishes

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 23 21:32:24 2004 UTC (15 years, 9 months ago) by olson
Branch: MAIN
Changes since 1.17: +3 -0 lines
Diff to previous 1.17
ELimiate spaces from subsystem name used in jobid, should help in
assignment stuff.

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jun 18 14:48:55 2004 UTC (15 years, 9 months ago) by olson
Branch: MAIN
Changes since 1.16: +35 -0 lines
Diff to previous 1.16
Changes for new clearing house display.

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 17 18:31:45 2004 UTC (15 years, 9 months ago) by olson
Branch: MAIN
Changes since 1.15: +4 -3 lines
Diff to previous 1.15
subsystem extension filename tweaks

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 16 17:33:53 2004 UTC (15 years, 9 months ago) by olson
Branch: MAIN
Changes since 1.14: +1 -1 lines
Diff to previous 1.14
Fix dumb typo.

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 16 16:52:10 2004 UTC (15 years, 9 months ago) by olson
Branch: MAIN
Changes since 1.13: +78 -2 lines
Diff to previous 1.13
Modifications to fix & finish up the automated subsystem extension.

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 16 14:05:42 2004 UTC (15 years, 9 months ago) by olson
Branch: MAIN
Changes since 1.12: +46 -1 lines
Diff to previous 1.12
Add support to allow only one subsystem extension to run for a given subsystem.

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jun 14 22:04:35 2004 UTC (15 years, 9 months ago) by olson
Branch: MAIN
Changes since 1.11: +129 -1 lines
Diff to previous 1.11
Add subsystem extension support

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 10 13:40:07 2004 UTC (15 years, 9 months ago) by olson
Branch: MAIN
Changes since 1.10: +1 -1 lines
Diff to previous 1.10
remove missing subsystem warning for now

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 8 15:02:15 2004 UTC (15 years, 9 months ago) by olson
Branch: MAIN
Changes since 1.9: +4 -1 lines
Diff to previous 1.9
Add capability for :scalar :list :remote annotations to FIG interface. This works with
modules that are declared as subclasses of FIGAttributes.

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jun 7 19:58:21 2004 UTC (15 years, 9 months ago) by olson
Branch: MAIN
Changes since 1.8: +0 -2 lines
Diff to previous 1.8
mods for removing empty seqs from export

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jun 4 16:26:13 2004 UTC (15 years, 10 months ago) by olson
Branch: MAIN
Changes since 1.7: +2 -2 lines
Diff to previous 1.7
fix filename used for area table

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jun 4 16:21:10 2004 UTC (15 years, 10 months ago) by olson
Branch: MAIN
Changes since 1.6: +132 -2 lines
Diff to previous 1.6
Add diagram api

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 1 20:30:14 2004 UTC (15 years, 10 months ago) by olson
Branch: MAIN
Changes since 1.5: +3 -1 lines
Diff to previous 1.5
Use DBI's prepare/execute to insert stuff, to get around quoting problems.

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 1 20:22:03 2004 UTC (15 years, 10 months ago) by olson
Branch: MAIN
Changes since 1.4: +65 -1 lines
Diff to previous 1.4
add db_sync, initialization of data structrues on load

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Thu May 27 19:27:53 2004 UTC (15 years, 10 months ago) by olson
Branch: MAIN
Changes since 1.3: +8 -1 lines
Diff to previous 1.3
add get_role_abbr, fix loading of abbrevs

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Wed May 26 22:34:24 2004 UTC (15 years, 10 months ago) by olson
Branch: MAIN
Changes since 1.2: +21 -0 lines
Diff to previous 1.2
add more accessors

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Tue May 25 16:19:23 2004 UTC (15 years, 10 months ago) by olson
Branch: MAIN
Changes since 1.1: +158 -42 lines
Diff to previous 1.1
more docs, more accessors

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Mon May 24 21:55:18 2004 UTC (15 years, 10 months ago) by olson
Branch: MAIN
Beginning of sim queueing stuff.
First implementation of Subsystem object, with FIG::peg_in_subsystem_cell
implemented in terms of it.

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