[Bio] / FigKernelPackages / SimsTable.pm Repository:
ViewVC logotype

Log of /FigKernelPackages/SimsTable.pm

Parent Directory Parent Directory


Links to HEAD: (view) (download) (as text) (annotate)
Sticky Tag:

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Nov 7 21:41:06 2013 UTC (6 years, 4 months ago) by golsen
Branch: MAIN
CVS Tags: HEAD, rast_rel_2014_0729, rast_rel_2014_0912
Changes since 1.10: +3 -2 lines
Diff to previous 1.10
Work around an issue when a user-supplied blast query has a fig| id that
is not in the SEED. There has got to be a cleaner fix, but for now the
is_real_feature test is removed from the query.

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Feb 10 21:34:47 2013 UTC (7 years, 1 month ago) by golsen
Branch: MAIN
Changes since 1.9: +0 -1 lines
Diff to previous 1.9
Comment out superfluous "use" statement.

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Jan 5 23:15:19 2013 UTC (7 years, 2 months ago) by golsen
Branch: MAIN
Changes since 1.8: +6 -3 lines
Diff to previous 1.8
Remove a useless 'use'.

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jan 4 07:06:47 2013 UTC (7 years, 3 months ago) by golsen
Branch: MAIN
Changes since 1.7: +338 -74 lines
Diff to previous 1.7
Add merging of identical subject sequences (for now it is always turned on).

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Nov 24 21:38:11 2012 UTC (7 years, 4 months ago) by golsen
Branch: MAIN
Changes since 1.6: +4 -3 lines
Diff to previous 1.6
Use new batch assign feature of FIG::assign_function().
Improve tracking of the reasons for assignments from similarities and trees.
Standardize the format for annotating such assignments:

Assignment projected from $id based on ...

Current reasons include identical sequence, solid rectangle, proximity
in tree, similarity and indirect similarity.

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 15 16:42:53 2012 UTC (7 years, 7 months ago) by golsen
Branch: MAIN
Changes since 1.5: +24 -8 lines
Diff to previous 1.5
Do a better job of checking for valid fids.

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jun 1 19:14:53 2012 UTC (7 years, 10 months ago) by golsen
Branch: MAIN
Changes since 1.4: +1 -0 lines
Diff to previous 1.4
Fix support for showing aliases in the sims table, but make it an active
show aliases option, rather than hide aliases.

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Jan 7 00:36:16 2012 UTC (8 years, 2 months ago) by golsen
Branch: MAIN
CVS Tags: mgrast_version_3_2
Changes since 1.3: +5 -0 lines
Diff to previous 1.3
Just a minor change to prevent confusion between old and new versions of
a list.

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jan 1 22:52:47 2012 UTC (8 years, 3 months ago) by golsen
Branch: MAIN
Changes since 1.2: +7 -10 lines
Diff to previous 1.2
Fix bad bug in assignment form Sims table radio buttons.

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Dec 20 01:45:03 2011 UTC (8 years, 3 months ago) by golsen
Branch: MAIN
Changes since 1.1: +234 -155 lines
Diff to previous 1.1
Fix bug with display of identical lines (delete them).
Support table without form (for use in other forms).

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Dec 2 22:00:28 2011 UTC (8 years, 4 months ago) by golsen
Branch: MAIN
CVS Tags: mgrast_dev_12152011, mgrast_release_3_1_2
Support for a new sims table format.

This form allows you to request diffs between any two revisions of this file. For each of the two "sides" of the diff, select a symbolic revision name using the selection box, or choose 'Use Text Field' and enter a numeric revision.

  Diffs between and
  Type of Diff should be a

Sort log by:

MCS Webmaster
ViewVC Help
Powered by ViewVC 1.0.3