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Revision 1.1 - (download) (as text) (annotate)
Mon Mar 7 21:47:00 2011 UTC (9 years, 1 month ago) by overbeek
Branch: MAIN
CVS Tags: mgrast_dev_08112011, mgrast_dev_08022011, rast_rel_2014_0912, myrast_rel40, mgrast_dev_05262011, mgrast_dev_04082011, mgrast_version_3_2, mgrast_dev_12152011, mgrast_dev_06072011, rast_rel_2014_0729, mgrast_release_3_0, mgrast_dev_03252011, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, mgrast_dev_04012011, myrast_33, rast_rel_2011_0928, mgrast_dev_04052011, mgrast_dev_10262011, HEAD
tree sims

package Sim2;

sub id1 {
    my ($sim) = @_;
    return $sim->[0];
}

sub id2 {
    my ($sim) = @_;
    return $sim->[1];
}

sub dist {
    my ($sim) = @_;
    return $sim->[2];
}
sub iden {
    my ($sim) = @_;
    return undef;
}

sub ali_ln {
    my ($sim) = @_;
    return undef;
}

sub mismatches {
    my ($sim) = @_;
    return undef;
}
sub b1 {
    my ($sim) = @_;
    return $sim->[4];
}

sub e1 {
    my ($sim) = @_;
    return $sim->[5];
}

sub loc1 {
    my($sim) = @_;

    return $sim->[6];
}

sub loc2 {
    my($sim) = @_;

    return $sim->[10];
}

sub b2 {
    my ($sim) = @_;
    return $sim->[8];
}

sub e2 {
    my ($sim) = @_;
    return $sim->[9];
}

sub psc {
    my ($sim) = @_;
    return undef;
}

sub bsc {
    my ($sim) = @_;
    return undef;
}

sub bit_score {
    my ($sim) = @_;
    return $sim->bsc;
}

sub nbsc {
    my($sim) = @_;
    return undef;
}

sub ln1 {
    my ($sim) = @_;
    return $sim->[3];
}

sub ln2 {
    my ($sim) = @_;
    return $sim->[7];
}

sub tool {
    my ($sim) = @_;
    return 'treesim';
}

1;

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