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revision 1.42, Fri Mar 19 00:15:05 2010 UTC revision 1.43, Fri Mar 19 03:43:08 2010 UTC
# Line 514  Line 514 
514      my ($fileName, $genomeA, $genomeB);      my ($fileName, $genomeA, $genomeB);
515      # Determine the ordering of the genome IDs.      # Determine the ordering of the genome IDs.
516      if (MustFlipGenomeIDs($genome1, $genome2)) {      if (MustFlipGenomeIDs($genome1, $genome2)) {
         ($genomeA, $genomeB) = ($genome1, $genome2);  
     } else {  
517          ($genomeA, $genomeB) = ($genome2, $genome1);          ($genomeA, $genomeB) = ($genome2, $genome1);
518        } else {
519            ($genomeA, $genomeB) = ($genome1, $genome2);
520      }      }
521      # Insure the source organism has a subdirectory in the organism cache.      # Insure the source organism has a subdirectory in the organism cache.
522      my $orgDir = "$FIG_Config::orgCache/$genomeA";      my $orgDir = "$FIG_Config::orgCache/$genomeA";

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