[Bio] / FigKernelPackages / SeedDas.pm Repository:
ViewVC logotype

Log of /FigKernelPackages/SeedDas.pm

Parent Directory Parent Directory


Links to HEAD: (view) (download) (as text) (annotate)
Links to rast_rel_2010_1206: (view) (download) (as text) (annotate)
Sticky Tag:

Revision 1.22 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jun 11 17:30:09 2007 UTC (12 years, 5 months ago) by parrello
Branch: MAIN
CVS Tags: mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_2008_0924, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912, rast_release_2008_09_29
Changes since 1.21: +0 -1 lines
Diff to previous 1.21
Removed a FIG dependency that was causing duplicate-method warnings.

Revision 1.21 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 23 22:00:45 2006 UTC (13 years, 2 months ago) by olson
Branch: MAIN
Changes since 1.20: +0 -2 lines
Diff to previous 1.20
Remove bogus stuff from contig track

Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 5 19:06:30 2005 UTC (13 years, 11 months ago) by olson
Branch: MAIN
CVS Tags: caBIG-05Apr06-00, caBIG-13Feb06-00
Changes since 1.19: +17 -0 lines
Diff to previous 1.19
Added license words.

Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 2 22:03:08 2005 UTC (14 years ago) by parrello
Branch: MAIN
CVS Tags: caBIG-00-00-00
Changes since 1.18: +890 -891 lines
Diff to previous 1.18
Converted tabs to spaces.
Fixed a compiler warning.

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 12 21:03:16 2005 UTC (14 years, 1 month ago) by overbeek
Branch: MAIN
Changes since 1.17: +16 -4 lines
Diff to previous 1.17
Broad minor fixes to make the SEED use relative paths throughout.

(The motivation this is to fully enable hiding the actual location of a running SEED system behind a web proxy so that things like NMPDR protein page references can be made stable across multiple releases).

This involved things like the following:

Changing $cgi->url() to $cgi->url(-relative => 1)
Changing $cgi->self_url() to $cgi->url(-relative => 1, -query => 1, -path_info => 1)

Changing the definition of FIG::cgi_url() to return "." (this may break something, but I haven't found it yet).

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Sep 6 21:12:37 2005 UTC (14 years, 2 months ago) by overbeek
Branch: MAIN
CVS Tags: caBIG-dataload-0
Changes since 1.16: +19 -0 lines
Diff to previous 1.16
NMPDR seed fixes

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Apr 8 20:22:23 2005 UTC (14 years, 7 months ago) by redwards
Branch: MAIN
CVS Tags: Root-bobdev_news, merge-bobdev_news-1, merge-bobdev_news-2, merge-bodev_news-3, merge-trunktag-bobdev_news-1, merge-trunktag-bobdev_news-2, merge-trunktag-bodev_news-3
Branch point for: Branch-bobdev_news
Changes since 1.15: +7 -2 lines
Diff to previous 1.15
changed tag/value pairs completely. Ooops!

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Apr 7 19:16:10 2005 UTC (14 years, 7 months ago) by redwards
Branch: MAIN
Changes since 1.14: +1 -1 lines
Diff to previous 1.14
many changes to key/value pairs to make them work

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Feb 3 21:47:38 2005 UTC (14 years, 9 months ago) by olson
Branch: MAIN
Changes since 1.13: +41 -8 lines
Diff to previous 1.13
Fix functional coupling track generation.

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jan 25 22:42:48 2005 UTC (14 years, 9 months ago) by olson
Branch: MAIN
Changes since 1.12: +3 -3 lines
Diff to previous 1.12
add SPROUT=1 to links.

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jan 18 23:10:31 2005 UTC (14 years, 10 months ago) by olson
Branch: MAIN
Changes since 1.11: +283 -11 lines
Diff to previous 1.11
Make searching work properly.

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jan 13 23:04:25 2005 UTC (14 years, 10 months ago) by olson
Branch: MAIN
Changes since 1.10: +20 -7 lines
Diff to previous 1.10
Added caching of feature location lookup; should accelerate display with multiple tracks up showing the same features.

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jan 13 22:56:53 2005 UTC (14 years, 10 months ago) by olson
Branch: MAIN
Changes since 1.9: +51 -13 lines
Diff to previous 1.9
Add SeedDas::get_peg_name and get_peg_func that cache prior results.

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jan 13 22:44:06 2005 UTC (14 years, 10 months ago) by olson
Branch: MAIN
Changes since 1.8: +44 -3 lines
Diff to previous 1.8
Make GBrowse work with new Sprout changes.

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jan 4 20:35:27 2005 UTC (14 years, 10 months ago) by olson
Branch: MAIN
Changes since 1.7: +49 -13 lines
Diff to previous 1.7
Change anti_alias to obey a name-mapping precedence rule.

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Oct 11 22:34:16 2004 UTC (15 years, 1 month ago) by olson
Branch: MAIN
Changes since 1.6: +98 -1 lines
Diff to previous 1.6
more fixes

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Oct 11 21:04:58 2004 UTC (15 years, 1 month ago) by olson
Branch: MAIN
Changes since 1.5: +113 -18 lines
Diff to previous 1.5
Add attribute track stuff.

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Oct 8 20:36:02 2004 UTC (15 years, 1 month ago) by olson
Branch: MAIN
Changes since 1.4: +181 -131 lines
Diff to previous 1.4
wehee

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Oct 5 22:06:28 2004 UTC (15 years, 1 month ago) by olson
Branch: MAIN
Changes since 1.3: +534 -12 lines
Diff to previous 1.3
more DAS fixes

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Oct 4 21:03:21 2004 UTC (15 years, 1 month ago) by olson
Branch: MAIN
Changes since 1.2: +527 -5 lines
Diff to previous 1.2
Fixed up das stuff.

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Oct 4 16:15:49 2004 UTC (15 years, 1 month ago) by olson
Branch: MAIN
Changes since 1.1: +0 -3 lines
Diff to previous 1.1
More tweaks.

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Oct 4 15:56:10 2004 UTC (15 years, 1 month ago) by olson
Branch: MAIN
Changes for DAS integration

This form allows you to request diffs between any two revisions of this file. For each of the two "sides" of the diff, select a symbolic revision name using the selection box, or choose 'Use Text Field' and enter a numeric revision.

  Diffs between and
  Type of Diff should be a

Sort log by:

MCS Webmaster
ViewVC Help
Powered by ViewVC 1.0.3