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Revision 1.9 - (view) (download) (as text)
| 1 : | disz | 1.1 | |
| 2 : | package SSserver; | ||
| 3 : | |||
| 4 : | olson | 1.4 | # |
| 5 : | parrello | 1.9 | # This is a SAS Component |
| 6 : | olson | 1.4 | # |
| 7 : | |||
| 8 : | disz | 1.1 | use LWP::UserAgent; |
| 9 : | use Data::Dumper; | ||
| 10 : | use YAML; | ||
| 11 : | |||
| 12 : | use strict; | ||
| 13 : | |||
| 14 : | sub new | ||
| 15 : | { | ||
| 16 : | my($class, $server_url) = @_; | ||
| 17 : | |||
| 18 : | parrello | 1.9 | $server_url = "http://servers.nmpdr.org/subsystem/server.cgi" unless $server_url; |
| 19 : | # $server_url = "http://bio-macpro-2.mcs.anl.gov/~disz/FIG/subsystem_server_sapling.cgi" unless $server_url; | ||
| 20 : | # $server_url = "http://bio-big.mcs.anl.gov/server/FIG/subsystem_server_sapling.cgi" unless $server_url; | ||
| 21 : | |||
| 22 : | disz | 1.1 | #$server_url = "http://bio-macpro-1.mcs.anl.gov/ross-proj/FIG/co_occurs_server.cgi" unless $server_url; |
| 23 : | |||
| 24 : | my $self = { | ||
| 25 : | server_url => $server_url, | ||
| 26 : | ua => LWP::UserAgent->new(), | ||
| 27 : | }; | ||
| 28 : | disz | 1.5 | $self->{ua}->timeout(30*60); |
| 29 : | disz | 1.1 | return bless $self, $class; |
| 30 : | } | ||
| 31 : | |||
| 32 : | parrello | 1.9 | sub pegs_implementing_roles { |
| 33 : | my ($self, @args) = @_; | ||
| 34 : | return $self->run_query("pegs_implementing_roles", @args); | ||
| 35 : | } | ||
| 36 : | |||
| 37 : | disz | 1.1 | sub is_in_subsystem { |
| 38 : | my ($self, @args) = @_; | ||
| 39 : | return $self->run_query("is_in_subsystem", @args); | ||
| 40 : | } | ||
| 41 : | sub is_in_subsystem_with { | ||
| 42 : | my ($self, @args) = @_; | ||
| 43 : | return $self->run_query("is_in_subsystem_with", @args); | ||
| 44 : | } | ||
| 45 : | |||
| 46 : | sub all_subsystems { | ||
| 47 : | my ($self, @args) = @_; | ||
| 48 : | return $self->run_query("all_subsystems", @args); | ||
| 49 : | } | ||
| 50 : | |||
| 51 : | sub subsystem_spreadsheet { | ||
| 52 : | my ($self, @args) = @_; | ||
| 53 : | return $self->run_query("subsystem_spreadsheet", @args); | ||
| 54 : | } | ||
| 55 : | |||
| 56 : | |||
| 57 : | disz | 1.5 | sub metabolic_reconstruction { |
| 58 : | my ($self, @args) = @_; | ||
| 59 : | return $self->run_query("metabolic_reconstruction", @args); | ||
| 60 : | } | ||
| 61 : | |||
| 62 : | disz | 1.1 | sub run_query |
| 63 : | { | ||
| 64 : | my($self, $function, @args ) = @_; | ||
| 65 : | |||
| 66 : | my $arg_string = Dump(@args); | ||
| 67 : | my $form = [function => $function, | ||
| 68 : | args => "$arg_string"]; | ||
| 69 : | |||
| 70 : | my $res = $self->{ua}->post($self->{server_url}, $form); | ||
| 71 : | if ($res->is_success) | ||
| 72 : | { | ||
| 73 : | disz | 1.2 | return Load($res->content); |
| 74 : | disz | 1.1 | } |
| 75 : | else | ||
| 76 : | { | ||
| 77 : | die "error on post " . $res->content; | ||
| 78 : | } | ||
| 79 : | } | ||
| 80 : | |||
| 81 : | |||
| 82 : | parrello | 1.9 | 1; |
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