Log of /FigKernelPackages/ProtSims.pm

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Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Oct 4 21:31:34 2010 UTC (9 years, 2 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2010_1206
Changes since 1.17: +1 -1 lines
Diff to previous 1.17

Further uniquify temp files.

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Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Oct 4 21:15:28 2010 UTC (9 years, 2 months ago) by olson
Branch: MAIN
Changes since 1.16: +16 -7 lines
Diff to previous 1.16

Name temp files with more than just the process id.

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Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Sep 14 21:34:35 2010 UTC (9 years, 3 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2010_0928
Changes since 1.15: +36 -2 lines
Diff to previous 1.15

Fixes for running under FCGI; also run with -a 4 if we're under FCGI and we can tell that
the system load is low enough.

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Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Sep 14 19:09:17 2010 UTC (9 years, 3 months ago) by olson
Branch: MAIN
Changes since 1.14: +28 -4 lines
Diff to previous 1.14

use nr lengths btree if computed

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Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 30 16:21:34 2010 UTC (9 years, 3 months ago) by olson
Branch: MAIN
Changes since 1.13: +27 -6 lines
Diff to previous 1.13

Convert to not use -| as that is not available on windows perl

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Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 30 16:09:00 2010 UTC (9 years, 3 months ago) by olson
Branch: MAIN
Changes since 1.12: +47 -29 lines
Diff to previous 1.12

Convert to use SeedAware.pm, remove unnecessary cat / shell usage.

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Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Mar 6 23:54:11 2010 UTC (9 years, 9 months ago) by overbeek
Branch: MAIN
CVS Tags: rast_rel_2010_0526, rast_rel_2010_0827
Changes since 1.11: +2 -2 lines
Diff to previous 1.11

allow use of just blast

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Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Feb 17 19:34:10 2010 UTC (9 years, 9 months ago) by parrello
Branch: MAIN
Changes since 1.10: +5 -3 lines
Diff to previous 1.10

Changed to work better if FIG_Config is present but no external bin directory is defined.

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Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Dec 17 21:35:24 2009 UTC (10 years ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2010_0118
Changes since 1.9: +19 -5 lines
Diff to previous 1.9

Distro fixups

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Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Dec 12 23:43:13 2009 UTC (10 years ago) by overbeek
Branch: MAIN
Changes since 1.8: +1 -1 lines
Diff to previous 1.8

fix sort

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Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Nov 7 18:37:44 2009 UTC (10 years, 1 month ago) by overbeek
Branch: MAIN
Changes since 1.7: +1 -1 lines
Diff to previous 1.7

unlink generated formatdb file

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Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Aug 23 17:23:53 2009 UTC (10 years, 3 months ago) by overbeek
Branch: MAIN
CVS Tags: rast_rel_2009_0925
Changes since 1.6: +14 -6 lines
Diff to previous 1.6

condensing sets of hits against a sequence

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Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Aug 23 01:37:28 2009 UTC (10 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.5: +2 -1 lines
Diff to previous 1.5

condense multiple sims from same pair

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Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Aug 23 01:20:23 2009 UTC (10 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.4: +33 -2 lines
Diff to previous 1.4

condense multiple sims from same pair

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Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Aug 21 21:31:01 2009 UTC (10 years, 3 months ago) by olson
Branch: MAIN
Changes since 1.3: +18 -12 lines
Diff to previous 1.3

some bugfixes

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Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 19 16:12:10 2009 UTC (10 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.2: +3 -3 lines
Diff to previous 1.2

fix passing tuples

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Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Aug 18 15:16:21 2009 UTC (10 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.1: +4 -2 lines
Diff to previous 1.1

minor fixes

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Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Aug 18 15:11:51 2009 UTC (10 years, 4 months ago) by overbeek
Branch: MAIN

Blat then blast