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Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Nov 6 11:07:34 2008 UTC (11 years, 4 months ago) by paczian
Branch: MAIN
CVS Tags: mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05
Changes since 1.14: +3 -0 lines
Diff to previous 1.14
added functional coupling pin

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 22 18:18:31 2008 UTC (11 years, 5 months ago) by dsouza
Branch: MAIN
Changes since 1.13: +43 -20 lines
Diff to previous 1.13
Changed to handle subsystem variant codes correctly.

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Oct 18 09:56:23 2008 UTC (11 years, 5 months ago) by parrello
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Changes since 1.12: +4 -3 lines
Diff to previous 1.12
Added tracing.

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Fri May 16 19:26:54 2008 UTC (11 years, 10 months ago) by parrello
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, rast_2008_0924, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_release_2008_09_29
Changes since 1.11: +3 -2 lines
Diff to previous 1.11
Fixed a compiler warning.

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Apr 29 05:45:29 2008 UTC (11 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.10: +452 -447 lines
Diff to previous 1.10
Added some trace messages.

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Apr 17 20:45:23 2008 UTC (11 years, 11 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2008_04_23
Changes since 1.9: +1 -1 lines
Diff to previous 1.9
Introduce get_figfam_data().

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Mar 23 15:54:41 2008 UTC (12 years ago) by parrello
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Changes since 1.8: +4 -6 lines
Diff to previous 1.8
Added tracing.

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Feb 26 17:44:16 2008 UTC (12 years, 1 month ago) by bartels
Branch: MAIN
Changes since 1.7: +58 -2 lines
Diff to previous 1.7
added add_features for features you do not get from the seed.

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Feb 20 19:23:58 2008 UTC (12 years, 1 month ago) by dsouza
Branch: MAIN
Changes since 1.6: +15 -1 lines
Diff to previous 1.6
PEG popup changed so that FigFam ID does not get repeated (was twice) for
FigFams which are not based on subsystems. This can be removed if the
FigFam function format gets changed.

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Feb 6 18:30:07 2008 UTC (12 years, 1 month ago) by dsouza
Branch: MAIN
Changes since 1.5: +19 -10 lines
Diff to previous 1.5
Bug fix for user selected genomes.

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Feb 5 21:04:36 2008 UTC (12 years, 1 month ago) by dsouza
Branch: MAIN
Changes since 1.4: +51 -7 lines
Diff to previous 1.4
1. Added FigFam name to feature data (for PEGs in FigFams).
2. Added support for user selection of region genomes.

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jan 14 16:38:27 2008 UTC (12 years, 2 months ago) by dsouza
Branch: MAIN
Changes since 1.3: +7 -8 lines
Diff to previous 1.3
Comments and whitespace changes

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Dec 21 17:22:47 2007 UTC (12 years, 3 months ago) by dsouza
Branch: MAIN
Changes since 1.2: +127 -117 lines
Diff to previous 1.2
Added protein length, subsystem information, functional coupling.
Changed behavior of 'collapse close genomes'.

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Dec 13 23:16:03 2007 UTC (12 years, 3 months ago) by dsouza
Branch: MAIN
Changes since 1.1: +28 -26 lines
Diff to previous 1.1
Modified selection of PEGs for non-collapsed regions.

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Nov 30 17:22:16 2007 UTC (12 years, 4 months ago) by dsouza
Branch: MAIN
PinnedRegions.pm creates the data structure used to create the
'compared regions' images.

It creates the list of pinned PEGs (based on similarity or PCH pins), gets
all the feature data for their contig regions required to create the image,
and packages it in a single data structure.

Mark D'Souza, 2007-11-30

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