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revision 1.8, Mon Dec 22 08:59:04 2003 UTC revision 1.9, Mon Dec 22 21:34:15 2003 UTC
# Line 285  Line 285 
285    
286      &FIG::run("mv $fig_disk/Tmp$$/$new_release $fig_disk/dist/releases");      &FIG::run("mv $fig_disk/Tmp$$/$new_release $fig_disk/dist/releases");
287      &FIG::run("rm -rf $fig_disk/Tmp$$");      &FIG::run("rm -rf $fig_disk/Tmp$$");
288      &FIG::run("switch_to_release $new_release");      &FIG::run("$FIG_Config::bin/switch_to_release $new_release");
289  }  }
290    
291    
# Line 407  Line 407 
407          if (-s "$fig_disk/FIG/Data/Organisms/$genome/annotations")          if (-s "$fig_disk/FIG/Data/Organisms/$genome/annotations")
408          {          {
409              &FIG::run("cp -p $fig_disk/FIG/Data/Organisms/$genome/annotations $fig_disk/BackupAnnotations/$genome");              &FIG::run("cp -p $fig_disk/FIG/Data/Organisms/$genome/annotations $fig_disk/BackupAnnotations/$genome");
410              &FIG::run("merge_annotations $fig_disk/BackupAnnotations/$genome $fig_disk/BackupAnnotations/New/$genome > $fig_disk/FIG/Data/Organisms/$genome/annotations");              &FIG::run("$FIG_Config::bin/merge_annotations $fig_disk/BackupAnnotations/$genome $fig_disk/BackupAnnotations/New/$genome > $fig_disk/FIG/Data/Organisms/$genome/annotations");
411          }          }
412          else          else
413          {          {
# Line 415  Line 415 
415          }          }
416          chmod 0777,"$fig_disk/FIG/Data/Organisms/$genome/annotations";          chmod 0777,"$fig_disk/FIG/Data/Organisms/$genome/annotations";
417      }      }
418      &FIG::run("index_annotations");      &FIG::run("$FIG_Config::bin/index_annotations");
419  }  }
420    
421  =pod  =pod
# Line 442  Line 442 
442          &FIG::run("cp $fig_disk/BackupAnnotations/$genome $fig_disk/FIG/Data/Organisms/$genome/annotations");          &FIG::run("cp $fig_disk/BackupAnnotations/$genome $fig_disk/FIG/Data/Organisms/$genome/annotations");
443          system "chmod 777 $fig_disk/FIG/Data/Organisms/$genome/annotations";          system "chmod 777 $fig_disk/FIG/Data/Organisms/$genome/annotations";
444      }      }
445      &FIG::run("index_annotations");      &FIG::run("$FIG_Config::bin/index_annotations");
446  }  }
447    
448  =pod  =pod
# Line 768  Line 768 
768      {      {
769          &FIG::run("cp $file $fig_disk/BackupTranslation_Rules");          &FIG::run("cp $file $fig_disk/BackupTranslation_Rules");
770      }      }
771      &FIG::run("merge_translation_rules $fig_disk/BackupTranslation_Rules/function.synonyms $package > $file 2> $fig_disk/BackupTranslation_Rules/conflicts");      &FIG::run("$FIG_Config::bin/merge_translation_rules $fig_disk/BackupTranslation_Rules/function.synonyms $package > $file 2> $fig_disk/BackupTranslation_Rules/conflicts");
772      chmod 0777,$file;      chmod 0777,$file;
773  }  }
774    

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