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fixed hit and query length (cannot be null)
fixed count in color computation
added column to FIGfam table
fixed rights check for "assign from" column in sim table
filtered out auxiliary roles from tables
made fixes to graphic view, fixed table issues with checkboxes
fixed link page in sims table
updated sims table, domain description bug
updated sims table, domain description bug
fixed functional coupling data retrieval
fixed functional coupling data retrieval
fixed functional coupling data retrieval
Fixed URL references.
added subsystems and evidence code as permanent columns in sims table
allow users to select a non-fig id as an assign_from function
changes to default sims view
corrected duplicates error and display for sims
added links for ilits and dlits
changed protein page links to annotation page links
added annotation capabilities for sims table
added sorting capability for sims table
added get_attributes method
Evidence page update
Fixed some compiler warnings.
changed the similarities view in the Evidence page
Introduce get_figfam_data().
added pfam attribute to visual and tabular view of an evidence
corrected the similarities view so they appear in order by evalue
resolved conflicts
functions for bulk figfam function added - sub family_functions
added host user and password variables to dbmaster initialization for ontology db
made changes to pfam object
made changes to pfam object
Changed POD format for better compatability with Wiki.
fixed hover titles for localization as well
fixed hover title in legend for domain
modified package for taxonomy
taxonomy update
fixed color bug
corrected quoting error
added functions
added functions
added sections
changes to tree update
updated gene context view
updated methods
added display_cello method
updated methods
added display_domain_composition method to SIMS
updates to display_table similarity
added changes to sims display
made changes to sims display
phobius display
modified sims display
made additions to Observation.pm
modified sims display
modified sims display
Added graphic view of similarities
cleaned up
modified compare regions display
modified compare regions display
added compare_regions section
added PDB package
Domain packages makes calls to Ontology server
modified the clusters package
fixed coloring
modified display in Clusters
modified get_objects
display method of Cluster package
added cluster package
Observation::Location package added
modified similarities method
added sims method
added PCH and IDENTICAL classes
fixed evalue parse
derived Domain class
Added the functional coupling method
Added Identical Protein sub
fixed get_sims_observations
new changes
updated usage example in documentation
Folkers first draft
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