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Revision 1.73 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Sep 9 14:38:50 2008 UTC (11 years, 3 months ago) by arodri7
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, rast_2008_0924, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_release_2008_09_29
Changes since 1.72: +1 -1 lines
Diff to previous 1.72
fixed functional coupling data retrieval

Revision 1.72 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Sep 9 14:36:54 2008 UTC (11 years, 3 months ago) by arodri7
Branch: MAIN
Changes since 1.71: +1 -1 lines
Diff to previous 1.71
fixed functional coupling data retrieval

Revision 1.71 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Sep 9 13:58:55 2008 UTC (11 years, 3 months ago) by arodri7
Branch: MAIN
Changes since 1.70: +1 -1 lines
Diff to previous 1.70
fixed functional coupling data retrieval

Revision 1.70 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 3 20:30:22 2008 UTC (11 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.69: +94 -94 lines
Diff to previous 1.69
Fixed URL references.

Revision 1.69 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Aug 29 21:55:02 2008 UTC (11 years, 3 months ago) by arodri7
Branch: MAIN
Changes since 1.68: +195 -25 lines
Diff to previous 1.68
added subsystems and evidence code as permanent columns in sims table

Revision 1.68 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Aug 24 15:00:17 2008 UTC (11 years, 3 months ago) by arodri7
Branch: MAIN
CVS Tags: mgrast_rel_2008_0806
Changes since 1.67: +5 -3 lines
Diff to previous 1.67
allow users to select a non-fig id as an assign_from function

Revision 1.67 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 20 17:06:47 2008 UTC (11 years, 3 months ago) by arodri7
Branch: MAIN
Changes since 1.66: +10 -3 lines
Diff to previous 1.66
changes to default sims view

Revision 1.66 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 18 20:25:42 2008 UTC (11 years, 3 months ago) by arodri7
Branch: MAIN
Changes since 1.65: +55 -15 lines
Diff to previous 1.65
corrected duplicates error and display for sims

Revision 1.65 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 7 19:22:46 2008 UTC (11 years, 4 months ago) by arodri7
Branch: MAIN
CVS Tags: rast_rel_2008_08_07
Changes since 1.64: +6 -0 lines
Diff to previous 1.64
added links for ilits and dlits

Revision 1.64 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 15 20:06:55 2008 UTC (11 years, 5 months ago) by paczian
Branch: MAIN
Changes since 1.63: +5 -6 lines
Diff to previous 1.63
changed protein page links to annotation page links

Revision 1.63 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 15 16:28:06 2008 UTC (11 years, 5 months ago) by arodri7
Branch: MAIN
Changes since 1.62: +4 -2 lines
Diff to previous 1.62
added annotation capabilities for sims table

Revision 1.62 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jul 9 19:55:31 2008 UTC (11 years, 5 months ago) by arodri7
Branch: MAIN
Changes since 1.61: +8 -5 lines
Diff to previous 1.61
added sorting capability for sims table

Revision 1.61 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jul 2 15:53:50 2008 UTC (11 years, 5 months ago) by mkubal
Branch: MAIN
CVS Tags: rast_rel_2008_07_21
Changes since 1.60: +10 -0 lines
Diff to previous 1.60
added get_attributes method

Revision 1.60 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jun 20 16:08:32 2008 UTC (11 years, 5 months ago) by arodri7
Branch: MAIN
Changes since 1.59: +446 -155 lines
Diff to previous 1.59
Evidence page update

Revision 1.59 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jun 2 05:05:35 2008 UTC (11 years, 6 months ago) by parrello
Branch: MAIN
CVS Tags: rast_rel_2008_06_16, rast_rel_2008_06_18
Changes since 1.58: +6 -6 lines
Diff to previous 1.58
Fixed some compiler warnings.

Revision 1.58 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Apr 23 15:50:16 2008 UTC (11 years, 7 months ago) by arodri7
Branch: MAIN
CVS Tags: rast_rel_2008_04_23
Changes since 1.57: +434 -175 lines
Diff to previous 1.57
changed the similarities view in the Evidence page

Revision 1.57 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Apr 17 20:45:23 2008 UTC (11 years, 7 months ago) by olson
Branch: MAIN
Changes since 1.56: +1 -1 lines
Diff to previous 1.56
Introduce get_figfam_data().

Revision 1.56 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Mar 24 18:25:30 2008 UTC (11 years, 8 months ago) by arodri7
Branch: MAIN
Changes since 1.55: +1 -1 lines
Diff to previous 1.55
added pfam attribute to visual and tabular view of an evidence

Revision 1.55 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Feb 23 06:48:43 2008 UTC (11 years, 9 months ago) by arodri7
Branch: MAIN
Changes since 1.54: +31 -6 lines
Diff to previous 1.54
corrected the similarities view so they appear in order by evalue

Revision 1.54 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Feb 18 20:40:19 2008 UTC (11 years, 9 months ago) by paczian
Branch: MAIN
Changes since 1.53: +1 -3 lines
Diff to previous 1.53
resolved conflicts

Revision 1.53 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Feb 18 20:29:09 2008 UTC (11 years, 9 months ago) by arodri7
Branch: MAIN
Changes since 1.52: +46 -24 lines
Diff to previous 1.52
functions for bulk figfam function added - sub family_functions

Revision 1.52 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Feb 15 22:52:19 2008 UTC (11 years, 10 months ago) by paczian
Branch: MAIN
Changes since 1.51: +23 -7 lines
Diff to previous 1.51
added host user and password variables to dbmaster initialization for ontology db

Revision 1.51 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Dec 6 18:55:37 2007 UTC (12 years ago) by arodri7
Branch: MAIN
Changes since 1.50: +18 -1 lines
Diff to previous 1.50
made changes to pfam object

Revision 1.50 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Dec 6 18:47:35 2007 UTC (12 years ago) by arodri7
Branch: MAIN
Changes since 1.49: +19 -8 lines
Diff to previous 1.49
made changes to pfam object

Revision 1.49 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Dec 6 13:59:34 2007 UTC (12 years ago) by parrello
Branch: MAIN
Changes since 1.48: +1 -8 lines
Diff to previous 1.48
Changed POD format for better compatability with Wiki.

Revision 1.48 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Dec 4 20:41:34 2007 UTC (12 years ago) by paczian
Branch: MAIN
Changes since 1.47: +4 -1 lines
Diff to previous 1.47
fixed hover titles for localization as well

Revision 1.47 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 3 19:53:00 2007 UTC (12 years ago) by paczian
Branch: MAIN
Changes since 1.46: +8 -5 lines
Diff to previous 1.46
fixed hover title in legend for domain

Revision 1.46 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Nov 29 19:33:33 2007 UTC (12 years ago) by arodri7
Branch: MAIN
Changes since 1.45: +2 -2 lines
Diff to previous 1.45
modified package for taxonomy

Revision 1.45 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 28 21:02:41 2007 UTC (12 years ago) by arodri7
Branch: MAIN
Changes since 1.44: +19 -17 lines
Diff to previous 1.44
taxonomy update

Revision 1.44 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Nov 27 20:13:21 2007 UTC (12 years ago) by paczian
Branch: MAIN
Changes since 1.43: +24 -21 lines
Diff to previous 1.43
fixed color bug

Revision 1.43 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Oct 16 15:38:50 2007 UTC (12 years, 2 months ago) by paczian
Branch: MAIN
Changes since 1.42: +2 -2 lines
Diff to previous 1.42
corrected quoting error

Revision 1.42 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Oct 12 21:16:02 2007 UTC (12 years, 2 months ago) by arodri7
Branch: MAIN
Changes since 1.41: +35 -23 lines
Diff to previous 1.41
added functions

Revision 1.41 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Oct 9 19:05:29 2007 UTC (12 years, 2 months ago) by arodri7
Branch: MAIN
Changes since 1.40: +476 -348 lines
Diff to previous 1.40
added functions

Revision 1.40 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Sep 20 22:27:20 2007 UTC (12 years, 2 months ago) by arodri7
Branch: MAIN
Changes since 1.39: +69 -64 lines
Diff to previous 1.39
added sections

Revision 1.39 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Sep 13 21:09:40 2007 UTC (12 years, 3 months ago) by arodri7
Branch: MAIN
Changes since 1.38: +48 -39 lines
Diff to previous 1.38
changes to tree update

Revision 1.38 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Sep 10 15:10:04 2007 UTC (12 years, 3 months ago) by arodri7
Branch: MAIN
Changes since 1.37: +130 -193 lines
Diff to previous 1.37
updated gene context view

Revision 1.37 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Sep 4 18:34:13 2007 UTC (12 years, 3 months ago) by arodri7
Branch: MAIN
Changes since 1.36: +65 -1 lines
Diff to previous 1.36
updated methods

Revision 1.36 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 30 02:42:29 2007 UTC (12 years, 3 months ago) by mkubal
Branch: MAIN
Changes since 1.35: +18 -2 lines
Diff to previous 1.35
added display_cello method

Revision 1.35 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 29 15:19:59 2007 UTC (12 years, 3 months ago) by arodri7
Branch: MAIN
Changes since 1.34: +25 -31 lines
Diff to previous 1.34
updated methods

Revision 1.34 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 27 21:39:52 2007 UTC (12 years, 3 months ago) by mkubal
Branch: MAIN
Changes since 1.33: +116 -6 lines
Diff to previous 1.33
added display_domain_composition method to SIMS

Revision 1.33 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 22 22:05:35 2007 UTC (12 years, 3 months ago) by arodri7
Branch: MAIN
Changes since 1.32: +71 -23 lines
Diff to previous 1.32
updates to display_table similarity

Revision 1.32 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Aug 21 22:45:54 2007 UTC (12 years, 3 months ago) by arodri7
Branch: MAIN
Changes since 1.31: +28 -24 lines
Diff to previous 1.31
added changes to sims display

Revision 1.31 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Aug 21 21:21:24 2007 UTC (12 years, 3 months ago) by arodri7
Branch: MAIN
Changes since 1.30: +46 -14 lines
Diff to previous 1.30
made changes to sims display

Revision 1.30 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Aug 21 17:05:00 2007 UTC (12 years, 3 months ago) by mkubal
Branch: MAIN
Changes since 1.29: +81 -4 lines
Diff to previous 1.29
phobius display

Revision 1.29 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 16 16:49:16 2007 UTC (12 years, 4 months ago) by arodri7
Branch: MAIN
Changes since 1.28: +103 -68 lines
Diff to previous 1.28
modified sims display

Revision 1.28 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Aug 14 21:32:57 2007 UTC (12 years, 4 months ago) by arodri7
Branch: MAIN
Changes since 1.27: +286 -45 lines
Diff to previous 1.27
made additions to Observation.pm

Revision 1.27 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jul 25 17:06:40 2007 UTC (12 years, 4 months ago) by arodri7
Branch: MAIN
Changes since 1.26: +8 -4 lines
Diff to previous 1.26
modified sims display

Revision 1.26 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jul 25 16:52:04 2007 UTC (12 years, 4 months ago) by arodri7
Branch: MAIN
Changes since 1.25: +82 -29 lines
Diff to previous 1.25
modified sims display

Revision 1.25 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jul 11 15:17:49 2007 UTC (12 years, 5 months ago) by arodri7
Branch: MAIN
Changes since 1.24: +147 -11 lines
Diff to previous 1.24
Added graphic view of similarities

Revision 1.24 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 10 20:11:38 2007 UTC (12 years, 5 months ago) by mkubal
Branch: MAIN
Changes since 1.23: +134 -476 lines
Diff to previous 1.23
cleaned up

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Fri Jun 29 16:31:35 2007 UTC (12 years, 5 months ago) by arodri7
Branch: MAIN
Changes since 1.22: +4 -6 lines
Diff to previous 1.22
modified compare regions display

Revision 1.22 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jun 29 16:22:37 2007 UTC (12 years, 5 months ago) by arodri7
Branch: MAIN
Changes since 1.21: +30 -14 lines
Diff to previous 1.21
modified compare regions display

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Thu Jun 28 22:08:05 2007 UTC (12 years, 5 months ago) by arodri7
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Changes since 1.20: +175 -69 lines
Diff to previous 1.20
added compare_regions section

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Wed Jun 27 22:14:01 2007 UTC (12 years, 5 months ago) by mkubal
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Changes since 1.19: +186 -1 lines
Diff to previous 1.19
added PDB package

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Wed Jun 27 14:59:39 2007 UTC (12 years, 5 months ago) by mkubal
Branch: MAIN
Changes since 1.18: +35 -6 lines
Diff to previous 1.18
Domain packages makes calls to Ontology server

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 26 19:52:09 2007 UTC (12 years, 5 months ago) by arodri7
Branch: MAIN
Changes since 1.17: +53 -11 lines
Diff to previous 1.17
modified the clusters package

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 26 02:19:46 2007 UTC (12 years, 5 months ago) by mkubal
Branch: MAIN
Changes since 1.16: +10 -25 lines
Diff to previous 1.16
fixed coloring

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Mon Jun 25 22:21:40 2007 UTC (12 years, 5 months ago) by arodri7
Branch: MAIN
Changes since 1.15: +70 -27 lines
Diff to previous 1.15
modified display in Clusters

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Mon Jun 25 16:51:02 2007 UTC (12 years, 5 months ago) by arodri7
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Changes since 1.14: +29 -47 lines
Diff to previous 1.14
modified get_objects

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Mon Jun 25 16:34:30 2007 UTC (12 years, 5 months ago) by mkubal
Branch: MAIN
Changes since 1.13: +114 -3 lines
Diff to previous 1.13
display method of Cluster package

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jun 22 20:30:38 2007 UTC (12 years, 5 months ago) by arodri7
Branch: MAIN
Changes since 1.12: +94 -1 lines
Diff to previous 1.12
added cluster package

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jun 22 00:22:32 2007 UTC (12 years, 5 months ago) by mkubal
Branch: MAIN
Changes since 1.11: +234 -14 lines
Diff to previous 1.11
Observation::Location package added

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 21 21:15:23 2007 UTC (12 years, 5 months ago) by arodri7
Branch: MAIN
Changes since 1.10: +218 -21 lines
Diff to previous 1.10
modified similarities method

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 20 20:55:36 2007 UTC (12 years, 5 months ago) by arodri7
Branch: MAIN
Changes since 1.9: +79 -10 lines
Diff to previous 1.9
added sims method

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 20 16:43:13 2007 UTC (12 years, 5 months ago) by arodri7
Branch: MAIN
Changes since 1.8: +169 -52 lines
Diff to previous 1.8
added PCH and IDENTICAL classes

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 19 22:11:25 2007 UTC (12 years, 5 months ago) by mkubal
Branch: MAIN
Changes since 1.7: +5 -5 lines
Diff to previous 1.7
fixed evalue parse

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 19 21:55:39 2007 UTC (12 years, 5 months ago) by mkubal
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Changes since 1.6: +173 -57 lines
Diff to previous 1.6
derived Domain class

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jun 18 16:20:45 2007 UTC (12 years, 5 months ago) by arodri7
Branch: MAIN
Changes since 1.5: +102 -2 lines
Diff to previous 1.5
Added the functional coupling method

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 13 17:56:35 2007 UTC (12 years, 6 months ago) by arodri7
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Changes since 1.4: +97 -4 lines
Diff to previous 1.4
Added Identical Protein sub

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 13 16:40:25 2007 UTC (12 years, 6 months ago) by mkubal
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Changes since 1.3: +10 -10 lines
Diff to previous 1.3
fixed get_sims_observations

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 12 20:17:44 2007 UTC (12 years, 6 months ago) by mkubal
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Changes since 1.2: +45 -14 lines
Diff to previous 1.2
new changes

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 12 16:51:53 2007 UTC (12 years, 6 months ago) by paczian
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Changes since 1.1: +10 -4 lines
Diff to previous 1.1
updated usage example in documentation

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Thu May 31 02:08:28 2007 UTC (12 years, 6 months ago) by mkubal
Branch: MAIN
Folkers first draft

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