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revision 1.2, Mon Dec 5 19:06:30 2005 UTC revision 1.3, Thu Dec 6 13:59:34 2007 UTC
# Line 93  Line 93 
93    
94  =head3 new  =head3 new
95    
96  C<< my $xprc = MergeTransactions->new(\%options, $command, $directory, $idFile); >>      my $xprc = MergeTransactions->new(\%options, $command, $directory, $idFile);
97    
98  Construct a new MergeTransactions object.  Construct a new MergeTransactions object.
99    
# Line 129  Line 129 
129    
130  =head3 Setup  =head3 Setup
131    
132  C<< $xprc->Setup(); >>      $xprc->Setup();
133    
134  Set up to apply the transactions. This includes reading the ID file.  Set up to apply the transactions. This includes reading the ID file.
135    
# Line 145  Line 145 
145    
146  =head3 SetupGenome  =head3 SetupGenome
147    
148  C<< $xprc->SetupGenome(); >>      $xprc->SetupGenome();
149    
150  Set up for processing this genome. This involves opening the output file  Set up for processing this genome. This involves opening the output file
151  for the transaction trace. The transaction trace essentially contains the  for the transaction trace. The transaction trace essentially contains the
# Line 162  Line 162 
162    
163  =head3 TeardownGenome  =head3 TeardownGenome
164    
165  C<< $xprc->TeardownGenome(); >>      $xprc->TeardownGenome();
166    
167  Clean up after processing this genome. This involves closing the transaction  Clean up after processing this genome. This involves closing the transaction
168  trace file and optionally committing any updates.  trace file and optionally committing any updates.
# Line 178  Line 178 
178    
179  =head3 Add  =head3 Add
180    
181  C<< $xprc->Add($newID, $locations, $translation); >>      $xprc->Add($newID, $locations, $translation);
182    
183  Add a new feature to the data store.  Add a new feature to the data store.
184    
# Line 212  Line 212 
212    
213  =head3 Change  =head3 Change
214    
215  C<< $xprc->Change($fid, $newID, $locations, $aliases, $translation); >>      $xprc->Change($fid, $newID, $locations, $aliases, $translation);
216    
217  Replace a feature to the data store. The feature will be marked for deletion and  Replace a feature to the data store. The feature will be marked for deletion and
218  a new feature will be put in its place.  a new feature will be put in its place.
# Line 259  Line 259 
259    
260  =head3 Delete  =head3 Delete
261    
262  C<< $xprc->Delete($fid); >>      $xprc->Delete($fid);
263    
264  Delete a feature from the data store. The feature will be marked as deleted,  Delete a feature from the data store. The feature will be marked as deleted,
265  which will remove it from consideration by most FIG methods. A garbage  which will remove it from consideration by most FIG methods. A garbage

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