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revision 1.3, Wed Dec 7 19:38:22 2005 UTC revision 1.4, Thu Dec 6 13:59:34 2007 UTC
# Line 40  Line 40 
40    
41  =head3 new  =head3 new
42    
43  C<< my $xprc = FudgeTransactions->new(\%options, $command, $directory, $idFile); >>      my $xprc = FudgeTransactions->new(\%options, $command, $directory, $idFile);
44    
45  Construct a new FudgeTransactions object.  Construct a new FudgeTransactions object.
46    
# Line 76  Line 76 
76    
77  =head3 Setup  =head3 Setup
78    
79  C<< $xprc->Setup(); >>      $xprc->Setup();
80    
81  Set up to apply the transactions. This includes reading the ID file.  Set up to apply the transactions. This includes reading the ID file.
82    
# Line 92  Line 92 
92    
93  =head3 Teardown  =head3 Teardown
94    
95  C<< $xprc->Teardown(); >>      $xprc->Teardown();
96    
97  Update the ID table with high numbers to avoid duplication.  Update the ID table with high numbers to avoid duplication.
98    
# Line 118  Line 118 
118    
119  =head3 SetupGenome  =head3 SetupGenome
120    
121  C<< $xprc->SetupGenome(); >>      $xprc->SetupGenome();
122    
123  Set up for processing this genome. This opens the output file.  Set up for processing this genome. This opens the output file.
124    
# Line 135  Line 135 
135    
136  =head3 TeardownGenome  =head3 TeardownGenome
137    
138  C<< $xprc->TeardownGenome(); >>      $xprc->TeardownGenome();
139    
140  Clean up after processing this genome. This involves closing the output file and  Clean up after processing this genome. This involves closing the output file and
141  doing a rename.  doing a rename.
# Line 160  Line 160 
160    
161  =head3 Add  =head3 Add
162    
163  C<< $xprc->Add($newID, $locations, $translation); >>      $xprc->Add($newID, $locations, $translation);
164    
165  Add a new feature to the data store. The Add is transmitted unmodified to the  Add a new feature to the data store. The Add is transmitted unmodified to the
166  output file and then a delete is created for the ID added the last time.  output file and then a delete is created for the ID added the last time.
# Line 200  Line 200 
200    
201  =head3 Change  =head3 Change
202    
203  C<< $xprc->Change($fid, $newID, $locations, $aliases, $translation); >>      $xprc->Change($fid, $newID, $locations, $aliases, $translation);
204    
205  Replace a feature to the data store. The feature will be marked for deletion and  Replace a feature to the data store. The feature will be marked for deletion and
206  a new feature will be put in its place.  a new feature will be put in its place.
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