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Revision 1.22 - (view) (download) (as text) (annotate) - [select for diffs]
Fri May 18 13:59:59 2007 UTC (12 years, 6 months ago) by redwards
Branch: MAIN
CVS Tags: HEAD, mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_2008_0924, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912, rast_release_2008_09_29
Changes since 1.21: +149 -3 lines
Diff to previous 1.21
Rewritten gff2tab and updated FigGFF POD/methods

Revision 1.21 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Feb 5 00:45:19 2006 UTC (13 years, 9 months ago) by overbeek
Branch: MAIN
CVS Tags: caBIG-05Apr06-00, caBIG-13Feb06-00
Changes since 1.20: +8 -0 lines
Diff to previous 1.20
RAE: Updating GFF files for extracting data from TIGR

Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 5 19:06:30 2005 UTC (13 years, 11 months ago) by olson
Branch: MAIN
Changes since 1.19: +17 -0 lines
Diff to previous 1.19
Added license words.

Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 2 21:56:33 2005 UTC (14 years ago) by parrello
Branch: MAIN
CVS Tags: caBIG-00-00-00
Changes since 1.18: +412 -412 lines
Diff to previous 1.18
Converted tabs to spaces.
Removed a redundant "my" that was causing a compiler warning.

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 5 20:34:02 2005 UTC (14 years, 1 month ago) by overbeek
Branch: MAIN
CVS Tags: caBIG-dataload-0
Changes since 1.17: +1 -1 lines
Diff to previous 1.17
fixes to update_uniq_id_data

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Sep 29 18:59:01 2005 UTC (14 years, 1 month ago) by efrank
Branch: MAIN
Changes since 1.16: +12 -4 lines
Diff to previous 1.16
Fix:
   NCBI_NP:X maps to X, not NP_X since X already has NP_ init.
   change $type to lc($type) for everything not just a few
Add:
         NCBI_NM  <-> NM_ just like NP_

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 28 17:02:34 2005 UTC (14 years, 1 month ago) by overbeek
Branch: MAIN
Changes since 1.15: +8 -4 lines
Diff to previous 1.15
More gff2seed mods. Support translation of dbxrefs to seed aliases.

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Sep 16 22:12:04 2005 UTC (14 years, 2 months ago) by efrank
Branch: MAIN
Changes since 1.14: +0 -2 lines
Diff to previous 1.14
remove debug dumper printout

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Sep 16 22:05:47 2005 UTC (14 years, 2 months ago) by olson
Branch: MAIN
Changes since 1.13: +7 -0 lines
Diff to previous 1.13
Handle the single-element-unescaped-attribute-bug.

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 3 21:47:55 2005 UTC (14 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.12: +1 -0 lines
Diff to previous 1.12
Correcting seed2gff<->gff2seed

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Apr 29 20:48:51 2005 UTC (14 years, 6 months ago) by olson
Branch: MAIN
CVS Tags: Root-bobdev_news, merge-bobdev_news-1, merge-bobdev_news-2, merge-bodev_news-3, merge-trunktag-bobdev_news-1, merge-trunktag-bobdev_news-2, merge-trunktag-bodev_news-3
Branch point for: Branch-bobdev_news
Changes since 1.11: +18 -17 lines
Diff to previous 1.11
Fix up format stuff.

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Apr 24 16:33:26 2005 UTC (14 years, 6 months ago) by redwards
Branch: MAIN
Changes since 1.10: +30 -19 lines
Diff to previous 1.10
minor changes to gff2seed/FigGFF

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Apr 21 16:28:21 2005 UTC (14 years, 6 months ago) by olson
Branch: MAIN
Changes since 1.9: +3 -3 lines
Diff to previous 1.9
Remove some debug prints.

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Apr 9 23:42:32 2005 UTC (14 years, 7 months ago) by redwards
Branch: MAIN
Changes since 1.8: +3 -0 lines
Diff to previous 1.8
gff2seed directory passes all checks

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Apr 9 21:09:30 2005 UTC (14 years, 7 months ago) by redwards
Branch: MAIN
Changes since 1.7: +0 -3 lines
Diff to previous 1.7
minor changes

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Apr 9 21:04:48 2005 UTC (14 years, 7 months ago) by redwards
Branch: MAIN
Changes since 1.6: +27 -5 lines
Diff to previous 1.6
initial commit of gff2seed to go from gff3 to seed directory

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Apr 9 17:21:15 2005 UTC (14 years, 7 months ago) by redwards
Branch: MAIN
Changes since 1.5: +136 -5 lines
Diff to previous 1.5
changes to seed_ctl and raelib

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Apr 8 20:22:23 2005 UTC (14 years, 7 months ago) by redwards
Branch: MAIN
Changes since 1.4: +1 -1 lines
Diff to previous 1.4
changed tag/value pairs completely. Ooops!

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Mar 30 20:49:24 2005 UTC (14 years, 7 months ago) by olson
Branch: MAIN
Changes since 1.3: +250 -48 lines
Diff to previous 1.3
More gff fixes.

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Mar 17 20:02:40 2005 UTC (14 years, 8 months ago) by olson
Branch: MAIN
Changes since 1.2: +39 -31 lines
Diff to previous 1.2
Change GFF format to only include cds features, and to attach the translation as a
key/value pair in the feature, with the translation itself in the FASTA section.

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Mar 15 19:47:15 2005 UTC (14 years, 8 months ago) by olson
Branch: MAIN
Changes since 1.1: +418 -46 lines
Diff to previous 1.1
Update to GFF handling code. Parses GFF now.

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Mar 14 19:17:37 2005 UTC (14 years, 8 months ago) by olson
Branch: MAIN
Add general-purpose GFF writing stuff.

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