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Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Sep 12 01:47:15 2008 UTC (11 years, 5 months ago) by overbeek
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, rast_2008_0924, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_release_2008_09_29
Changes since 1.17: +2 -2 lines
Diff to previous 1.17
fixes to FIGV.pm, CompareMR.pm and FIG.pm to support comparison of metabolic reconstructions

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Jul 5 15:53:08 2008 UTC (11 years, 7 months ago) by overbeek
Branch: MAIN
CVS Tags: mgrast_rel_2008_0806, rast_rel_2008_07_21, rast_rel_2008_08_07
Changes since 1.16: +68 -9 lines
Diff to previous 1.16
fixes to grouping

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jun 15 13:43:00 2008 UTC (11 years, 8 months ago) by overbeek
Branch: MAIN
CVS Tags: rast_rel_2008_06_16, rast_rel_2008_06_18
Changes since 1.15: +67 -8 lines
Diff to previous 1.15
fix to computing locations for frameshifts

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 12 21:42:00 2008 UTC (11 years, 8 months ago) by overbeek
Branch: MAIN
Changes since 1.14: +6 -6 lines
Diff to previous 1.14
enlarge the fragment of DNA in which a hit is sought

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 3 12:27:41 2008 UTC (11 years, 8 months ago) by overbeek
Branch: MAIN
Changes since 1.13: +12 -5 lines
Diff to previous 1.13
minor fixes relating to translation code

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 3 12:22:24 2008 UTC (11 years, 8 months ago) by overbeek
Branch: MAIN
Changes since 1.12: +43 -2 lines
Diff to previous 1.12
fix clean_span - it assumed positive strand

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Feb 13 15:21:41 2008 UTC (12 years ago) by overbeek
Branch: MAIN
CVS Tags: rast_rel_2008_04_23
Changes since 1.11: +3 -3 lines
Diff to previous 1.11
clean up name conflicts

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Feb 9 14:05:06 2008 UTC (12 years ago) by overbeek
Branch: MAIN
Changes since 1.10: +15 -2 lines
Diff to previous 1.10
fixes for nonstandard genetic code

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Feb 9 02:02:51 2008 UTC (12 years ago) by overbeek
Branch: MAIN
Changes since 1.9: +9 -2 lines
Diff to previous 1.9
fixes to FS_RAST.pm to handle nonstandard genetic codes

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Jan 5 15:35:52 2008 UTC (12 years, 1 month ago) by overbeek
Branch: MAIN
Changes since 1.8: +2 -2 lines
Diff to previous 1.8
additions to FIGfam maintenance

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Dec 18 14:12:56 2007 UTC (12 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.7: +3 -3 lines
Diff to previous 1.7
require valid starts and stops for frameshift correction

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Dec 16 03:55:43 2007 UTC (12 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.6: +103 -70 lines
Diff to previous 1.6
fixes to frameshift correction

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Dec 8 23:27:10 2007 UTC (12 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.5: +1 -0 lines
Diff to previous 1.5
remove trailing stop codon from translation

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Dec 8 21:20:41 2007 UTC (12 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.4: +64 -20 lines
Diff to previous 1.4
fixes to FS_RAST.pm for frameshift detection

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 3 18:42:17 2007 UTC (12 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.3: +1 -1 lines
Diff to previous 1.3
fix reference to nap in FS_RAST.pm

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Dec 2 18:41:53 2007 UTC (12 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.2: +7 -0 lines
Diff to previous 1.2
fixes to add an extra alignment

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 21 20:41:05 2007 UTC (12 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.1: +150 -54 lines
Diff to previous 1.1
add code to fix frameshifts in a genome

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 21 13:36:05 2007 UTC (12 years, 3 months ago) by overbeek
Branch: MAIN
add FS_RAST.pm, a module to support RAST searches correcting frameshifts

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