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Revision 1.30 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Aug 31 14:40:21 2010 UTC (9 years, 3 months ago) by chenry
Branch: MAIN
CVS Tags: rast_rel_2010_0928, rast_rel_2010_1206
Changes since 1.29: +11 -16 lines
Diff to previous 1.29 , to selected 1.21
Bug fixes to pipeline.

Revision 1.29 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 30 02:41:43 2010 UTC (9 years, 3 months ago) by chenry
Branch: MAIN
Changes since 1.28: +192 -74 lines
Diff to previous 1.28 , to selected 1.21
Changing biomass reaction code and adding code for model curation via upload.

Revision 1.28 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 25 20:39:16 2010 UTC (9 years, 3 months ago) by chenry
Branch: MAIN
CVS Tags: rast_rel_2010_0827
Changes since 1.27: +4 -1 lines
Diff to previous 1.27 , to selected 1.21
Bug fixes for tutorial.

Revision 1.27 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Aug 20 14:35:38 2010 UTC (9 years, 3 months ago) by chenry
Branch: MAIN
Changes since 1.26: +462 -241 lines
Diff to previous 1.26 , to selected 1.21
Bug fixes and changes relating to a switch to PPO database.

Revision 1.26 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 5 07:52:30 2010 UTC (9 years, 4 months ago) by chenry
Branch: MAIN
Changes since 1.25: +12 -92 lines
Diff to previous 1.25 , to selected 1.21
Changes to patch function.

Revision 1.25 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jul 26 15:06:50 2010 UTC (9 years, 4 months ago) by dejongh
Branch: MAIN
Changes since 1.24: +5 -5 lines
Diff to previous 1.24 , to selected 1.21
Fix printing of flux

Revision 1.24 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jul 26 06:21:14 2010 UTC (9 years, 4 months ago) by chenry
Branch: MAIN
Changes since 1.23: +4 -1 lines
Diff to previous 1.23 , to selected 1.21
Correcting bug in autocompleteMedia function.

Revision 1.23 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jul 26 05:53:06 2010 UTC (9 years, 4 months ago) by chenry
Branch: MAIN
Changes since 1.22: +0 -1 lines
Diff to previous 1.22 , to selected 1.21
Removing debug messages

Revision 1.22 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jul 26 04:51:24 2010 UTC (9 years, 4 months ago) by chenry
Branch: MAIN
Changes since 1.21: +71 -40 lines
Diff to previous 1.21
Bug fixes and new functions

Revision 1.21 - (view) (download) (as text) (annotate) - [selected]
Sat Jul 10 22:43:52 2010 UTC (9 years, 5 months ago) by chenry
Branch: MAIN
Changes since 1.20: +244 -107 lines
Diff to previous 1.20
Correcting bugs and adding functionality.

Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 15 04:04:01 2010 UTC (9 years, 6 months ago) by chenry
Branch: MAIN
Changes since 1.19: +544 -252 lines
Diff to previous 1.19 , to selected 1.21
Fixing bugs in model reconstruction and history functions.

Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 2 08:05:35 2010 UTC (9 years, 6 months ago) by chenry
Branch: MAIN
Changes since 1.18: +209 -94 lines
Diff to previous 1.18 , to selected 1.21
Some bug fixes and introduction of model history mechanism.

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Mon May 31 18:05:08 2010 UTC (9 years, 6 months ago) by chenry
Branch: MAIN
Changes since 1.17: +4356 -4356 lines
Diff to previous 1.17 , to selected 1.21
*** empty log message ***

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Fri May 28 15:26:48 2010 UTC (9 years, 6 months ago) by dejongh
Branch: MAIN
Changes since 1.16: +11 -11 lines
Diff to previous 1.16 , to selected 1.21
option to make the flux values only 3 significant digits

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Fri May 21 04:32:42 2010 UTC (9 years, 6 months ago) by chenry
Branch: MAIN
Changes since 1.15: +6 -4 lines
Diff to previous 1.15 , to selected 1.21
Changes to support new biomass compounds table.

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Wed May 19 21:02:11 2010 UTC (9 years, 6 months ago) by chenry
Branch: MAIN
Changes since 1.14: +62 -0 lines
Diff to previous 1.14 , to selected 1.21
Changes made relating to model view adjustments.

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Thu May 13 05:04:26 2010 UTC (9 years, 7 months ago) by chenry
Branch: MAIN
Changes since 1.13: +95 -293 lines
Diff to previous 1.13 , to selected 1.21
Switching models over to PPO database.

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Mon May 10 21:45:44 2010 UTC (9 years, 7 months ago) by chenry
Branch: MAIN
Changes since 1.12: +44 -45 lines
Diff to previous 1.12 , to selected 1.21
Corrected a bug in feature_table function.

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Apr 22 20:36:00 2010 UTC (9 years, 7 months ago) by chenry
Branch: MAIN
CVS Tags: rast_rel_2010_0526
Changes since 1.11: +43 -1 lines
Diff to previous 1.11 , to selected 1.21
Minor corrections.

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Apr 15 21:51:15 2010 UTC (9 years, 8 months ago) by dejongh
Branch: MAIN
Changes since 1.10: +12 -12 lines
Diff to previous 1.10 , to selected 1.21
Fix formatting; add permanently knocked out reactions when gapfilling

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Apr 12 17:13:26 2010 UTC (9 years, 8 months ago) by chenry
Branch: MAIN
Changes since 1.9: +386 -47 lines
Diff to previous 1.9 , to selected 1.21
Primarily changes in the web access to gene data for the model.

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Apr 7 13:17:07 2010 UTC (9 years, 8 months ago) by dejongh
Branch: MAIN
Changes since 1.8: +21 -22 lines
Diff to previous 1.8 , to selected 1.21
Print fluxes in gene column

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Mar 23 16:35:52 2010 UTC (9 years, 8 months ago) by dejongh
Branch: MAIN
Changes since 1.7: +2 -2 lines
Diff to previous 1.7 , to selected 1.21
Separate minimal paths using bar rather than comma, since commas are used to separate reactions

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Mar 20 19:01:29 2010 UTC (9 years, 8 months ago) by chenry
Branch: MAIN
Changes since 1.6: +5 -5 lines
Diff to previous 1.6 , to selected 1.21
*** empty log message ***

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Mar 17 18:56:20 2010 UTC (9 years, 8 months ago) by chenry
Branch: MAIN
Changes since 1.5: +1 -1 lines
Diff to previous 1.5 , to selected 1.21
*** empty log message ***

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Mar 8 19:53:15 2010 UTC (9 years, 9 months ago) by chenry
Branch: MAIN
Changes since 1.4: +781 -35 lines
Diff to previous 1.4 , to selected 1.21
*** empty log message ***

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 21 20:05:25 2009 UTC (9 years, 11 months ago) by chenry
Branch: MAIN
CVS Tags: rast_rel_2010_0118
Changes since 1.3: +45 -0 lines
Diff to previous 1.3 , to selected 1.21
*** empty log message ***

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Dec 18 17:41:47 2009 UTC (9 years, 11 months ago) by chenry
Branch: MAIN
Changes since 1.2: +36 -5 lines
Diff to previous 1.2 , to selected 1.21
*** empty log message ***

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Dec 11 21:37:02 2009 UTC (10 years ago) by chenry
Branch: MAIN
Changes since 1.1: +3290 -45 lines
Diff to previous 1.1 , to selected 1.21
*** empty log message ***

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Oct 25 21:42:35 2009 UTC (10 years, 1 month ago) by chenry
Branch: MAIN
Diff to selected 1.21
*** empty log message ***

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