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Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jul 29 19:17:42 2010 UTC (9 years, 3 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, myrast_33, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119
Changes since 1.17: +29 -0 lines
Diff to previous 1.17
Add FIGV and FIGM function_of_bulk

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 27 20:48:41 2009 UTC (10 years, 2 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526
Changes since 1.16: +127 -56 lines
Diff to previous 1.16
Support for Seedviewer Subsystems.pm speedups.

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jun 22 15:06:56 2009 UTC (10 years, 4 months ago) by paczian
Branch: MAIN
CVS Tags: rast_rel_2009_07_09
Changes since 1.15: +2 -2 lines
Diff to previous 1.15
added preference option for annotators to display aux roles on the annotation page

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Wed May 27 17:00:35 2009 UTC (10 years, 5 months ago) by paczian
Branch: MAIN
Changes since 1.14: +22 -0 lines
Diff to previous 1.14
added FIGfam support for RAST orgs
fixed deleted_fids hash

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Thu May 7 10:15:13 2009 UTC (10 years, 6 months ago) by paczian
Branch: MAIN
CVS Tags: rast_rel_2009_05_18
Changes since 1.13: +2 -2 lines
Diff to previous 1.13
fixed call to seqs_with_role to match FIG.pm invocation

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Apr 20 14:55:43 2009 UTC (10 years, 7 months ago) by paczian
Branch: MAIN
Changes since 1.12: +12 -0 lines
Diff to previous 1.12
added method genome_info

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Mar 26 09:53:35 2009 UTC (10 years, 7 months ago) by dejongh
Branch: MAIN
CVS Tags: rast_rel_2009_03_26
Changes since 1.11: +18 -17 lines
Diff to previous 1.11
Moved variant code loading outside of for loop to speed up processing of multiple genomes in a FIGM

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Mar 17 14:32:47 2009 UTC (10 years, 8 months ago) by dejongh
Branch: MAIN
Changes since 1.10: +7 -0 lines
Diff to previous 1.10
Added shell for seqs_with_role

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Feb 5 16:21:55 2009 UTC (10 years, 9 months ago) by paczian
Branch: MAIN
Changes since 1.9: +42 -1 lines
Diff to previous 1.9
added function subsystems_for_pegs_complete

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jan 20 11:12:53 2009 UTC (10 years, 9 months ago) by paczian
Branch: MAIN
CVS Tags: rast_rel_2009_02_05
Changes since 1.8: +36 -0 lines
Diff to previous 1.8
added the function "coupled_to_batch"

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Dec 4 14:04:17 2008 UTC (10 years, 11 months ago) by paczian
Branch: MAIN
CVS Tags: rast_rel_2008_12_18
Changes since 1.7: +14 -0 lines
Diff to previous 1.7
added subsystems_for_peg_complete
added protein_subsystem_to_roles

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Nov 20 15:49:17 2008 UTC (10 years, 11 months ago) by paczian
Branch: MAIN
CVS Tags: rast_rel_2008_11_24
Changes since 1.6: +15 -0 lines
Diff to previous 1.6
added add_feature and delete_feature

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Nov 13 21:49:55 2008 UTC (11 years ago) by dejongh
Branch: MAIN
Changes since 1.5: +3 -2 lines
Diff to previous 1.5
fix scenario_directory to work for All

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 12 18:24:13 2008 UTC (11 years ago) by dejongh
Branch: MAIN
Changes since 1.4: +6 -7 lines
Diff to previous 1.4
switch to scenario_directory

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Nov 11 13:41:27 2008 UTC (11 years ago) by paczian
Branch: MAIN
Changes since 1.3: +104 -0 lines
Diff to previous 1.3
updated for use with FIGM

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Nov 6 11:05:12 2008 UTC (11 years ago) by paczian
Branch: MAIN
CVS Tags: mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2
Changes since 1.2: +29 -4 lines
Diff to previous 1.2
added support for FIGM

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Oct 2 21:48:41 2008 UTC (11 years, 1 month ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2008_10_09, rast_rel_2008_10_29
Changes since 1.1: +47 -2 lines
Diff to previous 1.1
FIGM/FIGV changes for sims between RAST orgs.

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 26 21:11:11 2008 UTC (11 years, 4 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, rast_2008_0924, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_release_2008_09_29
Add annotation support to FIGV. Add FIGM.

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