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revision 1.636, Wed Oct 31 23:18:01 2007 UTC revision 1.637, Thu Nov 1 16:33:29 2007 UTC
# Line 872  Line 872 
872          }          }
873      }      }
874    
875        print "index_contigs $genome\n";
876      $sysrc = system("index_contigs $genome");      $sysrc = system("index_contigs $genome");
877      $sysrc == 0 or      $sysrc == 0 or
878          warn "index_contigs $genome failed; continuing with installation\n";          warn "index_contigs $genome failed; continuing with installation\n";
879    
880        print "compute_genome_counts $genome\n";
881      $sysrc = system("compute_genome_counts $genome");      $sysrc = system("compute_genome_counts $genome");
882      $sysrc == 0 or      $sysrc == 0 or
883          warn "compute_genome_counts $genome failed; continuing with installation\n";          warn "compute_genome_counts $genome failed; continuing with installation\n";
884    
885        print "load_features $genome\n";
886      $sysrc = system("load_features $genome");      $sysrc = system("load_features $genome");
887      $sysrc == 0 or      $sysrc == 0 or
888          warn "load_features $genome failed; continuing with installation\n";          warn "load_features $genome failed; continuing with installation\n";
# Line 887  Line 890 
890      $rc = 1;      $rc = 1;
891      if (-s "$genome_dir/Features/peg/fasta")      if (-s "$genome_dir/Features/peg/fasta")
892      {      {
893            print "index_translations $genome\n";
894          $sysrc = system("index_translations $genome");          $sysrc = system("index_translations $genome");
895          $sysrc == 0 or          $sysrc == 0 or
896              warn "index_translations $genome failed; continuing with installation\n";              warn "index_translations $genome failed; continuing with installation\n";
# Line 924  Line 927 
927      if ((-s "$genome_dir/assigned_functions") ||      if ((-s "$genome_dir/assigned_functions") ||
928          (-d "$genome_dir/UserModels"))          (-d "$genome_dir/UserModels"))
929      {      {
930            print "add_assertions_of_function $genome\n";
931          $sysrc = system("add_assertions_of_function $genome");          $sysrc = system("add_assertions_of_function $genome");
932          $sysrc == 0 or warn "add_assertions_of_function $genome failed; continuing with installation\n";          $sysrc == 0 or warn "add_assertions_of_function $genome failed; continuing with installation\n";
933      }      }
934    
935      if (-s "$genome_dir/annotations")      if (-s "$genome_dir/annotations")
936      {      {
937            print "index_annotations $genome\n";
938          $sysrc = system("index_annotations $genome");          $sysrc = system("index_annotations $genome");
939          $sysrc == 0 or warn "index_annoations $genome failed; continuing with installation\n";          $sysrc == 0 or warn "index_annoations $genome failed; continuing with installation\n";
940      }      }
# Line 945  Line 950 
950    
951      if (-f $pchs and  -f $pch_scores)      if (-f $pchs and  -f $pch_scores)
952      {      {
953            print "install_new_coupling_data $genome $pchs $pch_scores\n";
954          $sysrc = system("$FIG_Config::bin/install_new_coupling_data",          $sysrc = system("$FIG_Config::bin/install_new_coupling_data",
955                          $genome,                          $genome,
956                          $pchs,                          $pchs,

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