[Bio] / FigKernelPackages / FIG.pm Repository:
ViewVC logotype

Diff of /FigKernelPackages/FIG.pm

Parent Directory Parent Directory | Revision Log Revision Log | View Patch Patch

revision 1.352, Mon Aug 22 05:43:02 2005 UTC revision 1.353, Tue Aug 30 07:27:59 2005 UTC
# Line 374  Line 374 
374      &run("cp -r $genomeF $FIG_Config::organisms");      &run("cp -r $genomeF $FIG_Config::organisms");
375      &run("chmod -R 777 $FIG_Config::organisms/$genome");      &run("chmod -R 777 $FIG_Config::organisms/$genome");
376    
377        if (-s "$FIG_Config::organisms/$genome/COMPLETE")
378        {
379            print STDERR "$genome was marked as \"complete\"\n";
380        }
381        else
382        {
383            &run("assess_completeness $genome");
384            if (-s "$FIG_Config::organisms/$genome/PROBABLY_COMPLETE")
385            {
386                print STDERR "Assessed $genome to be probably complete\n";
387                &run("cp -p $FIG_Config::organisms/$genome/PROBABLY_COMPLETE $FIG_Config::organisms/$genome/COMPLETE");
388            }
389            else
390            {
391                print STDERR "Assessed $genome to not be probably complete\n";
392            }
393        }
394    
395      &run("index_contigs $genome");      &run("index_contigs $genome");
396      &run("compute_genome_counts $genome");      &run("compute_genome_counts $genome");
397      &run("load_features $genome");      &run("load_features $genome");

Legend:
Removed from v.1.352  
changed lines
  Added in v.1.353

MCS Webmaster
ViewVC Help
Powered by ViewVC 1.0.3