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revision 1.743, Tue Jan 20 20:19:23 2009 UTC revision 1.744, Fri Jan 23 13:09:31 2009 UTC
# Line 8106  Line 8106 
8106    
8107                              #...Build BLAST nucleotide database for extracted DNA region,                              #...Build BLAST nucleotide database for extracted DNA region,
8108                              #   and TBLASTN $peg2 against the DNA:                              #   and TBLASTN $peg2 against the DNA:
8109                              &FIG::run("formatdb -i $tmp_dna -pF");                              &FIG::run("$FIG_Config::ext_bin/formatdb -i $tmp_dna -pF");
8110                              open(BLAST,"blastall -i $tmp_prot -d $tmp_dna -p tblastn -FF -e 1.0e-20 |")                              open(BLAST,"$FIG_Config::ext_bin/blastall -i $tmp_prot -d $tmp_dna -p tblastn -FF -e 1.0e-20 |")
8111                                  || die "could not blast";                                  || die "could not blast";
8112    
8113                              #...Parse the TBLASTN output; find and sort HSPs by left boundary:                              #...Parse the TBLASTN output; find and sort HSPs by left boundary:

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