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revision 1.504, Sun Jul 30 01:43:56 2006 UTC revision 1.505, Tue Aug 8 22:19:37 2006 UTC
# Line 8137  Line 8137 
8137    
8138  =item RETURN  =item RETURN
8139    
8140  Returns a list of 2-tuples. The first element of the list is the best-hit PEG; the second  Returns a list of 3-tuples. The first element of the list is the best-hit PEG; the second element is the score. A lower score indicates a better match. The third element is the normalized bit score for the pair, and is normalized to the length of the protein.
 element is the score. A lower score indicates a better match.  
8141    
8142  =back  =back
8143    

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